PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088207.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 286aa    MW: 31311.4 Da    PI: 8.2467
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088207.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.51e-201257147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEdell ++v+++G ++W++I+r ++ gR++k+c++rw + 
   XP_011088207.1 12 KGPWSPEEDELLRKLVQRHGARNWSLISRSIP-GRSGKSCRLRWCNQ 57
                     79******************************.***********985 PP
2Myb_DNA-binding57.62.9e-1866108347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T++Ede++++a++q+G++ W+tIar ++ gRt++ +k++w++ 
   XP_011088207.1  66 AFTADEDEIILKAHAQFGNK-WATIARLLN-GRTDNAIKNHWNST 108
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.917962IPR017930Myb domain
SuperFamilySSF466897.49E-3210105IPR009057Homeodomain-like
SMARTSM007177.8E-181160IPR001005SANT/Myb domain
PfamPF002498.8E-201257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-261365IPR009057Homeodomain-like
CDDcd001677.20E-171456No hitNo description
SMARTSM007174.4E-1563111IPR001005SANT/Myb domain
PROSITE profilePS5129420.28964113IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-2366112IPR009057Homeodomain-like
CDDcd001673.78E-1266109No hitNo description
PfamPF002497.1E-1566108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAAAKEVGDR IKGPWSPEED ELLRKLVQRH GARNWSLISR SIPGRSGKSC RLRWCNQLSP  60
EVEHRAFTAD EDEIILKAHA QFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKFAAETAAV  120
GVGEERLAQV LRRTGSGDVS TAMTNGFSPQ SLCPSDSDTC DSGNNVKFSF PLPTNALVLP  180
RAAAADEENS DGELTALTLC LPGTGSDSSV KMTGEKDSTA TALTHPSHHR LSHAAEVDLK  240
KKRLSLGPEL LAVMQEMIRT EVRNYLSEHE EIIPAVKRIG ISKLNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-40111133105MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-40111133105C-Myb DNA-Binding Domain
1msf_C8e-40111133105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088207.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551750.10.0transcription factor MYB44-like
SwissprotO231604e-74MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0K1SBK41e-114A0A0K1SBK4_REHGL; R2R3-MYB protein
STRINGMigut.B00390.1.p1e-99(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-73myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]