PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088190.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HB-PHD
Protein Properties Length: 715aa    MW: 79146.1 Da    PI: 4.6377
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088190.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.61.6e-066767081244
                     HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS
        Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqV 44 
                     +++L + F++n+yp ++ +e LAk+lgL+ +q+
  XP_011088190.1 676 TQRLYASFNENQYPERAVKENLAKELGLKIQQI 708
                     789*************************99998 PP
2PHD39.81e-13317372151
                     SBTTTSSTCT..TSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgksde..egelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ Cg++d   +++++lCdg C++ fH+ Cl+++l +e++p g   w+C+ C++k
  XP_011088190.1 317 FCAKCGSKDLplDNDIILCDGaCERGFHQFCLEPPLLKEDIPPGdeGWICPGCDCK 372
                     699****44455********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.79E-13307375IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.7E-12314371IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.994315372IPR019787Zinc finger, PHD-finger
PfamPF006284.8E-11317372IPR019787Zinc finger, PHD-finger
CDDcd155042.99E-27317369No hitNo description
SMARTSM002491.9E-9317370IPR001965Zinc finger, PHD-type
PROSITE patternPS013590318369IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.5E-8656708IPR009057Homeodomain-like
SuperFamilySSF466898.55E-6660708IPR009057Homeodomain-like
CDDcd000861.01E-5665708No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MGLIKIGTQD PESNMIEPLE TSENLAQDPK SGPLTPANYK MDSETLVTET MEKKEVTGSQ  60
NFRKNIGSVE EISDQIKETG PNPEDISQNL DAEKEEPPLE SAKTLSVAQN LEVISQNGLT  120
NLENMCISPE AASANHGCGK LETVHIDETK NSGQLGTEDR GCSVQSRKRK AGLKSPVTSS  180
WVLRSKSQEK PKAPEPNENV KEDSANGEKK KRGRKKKPMQ KTTVNEFSRT KTHLRYLLHR  240
IKYEQSLIDA YSAEGWKGQS LDKLKPEKEL QRAKSHILRY KLKIRALIQR LDMSLAVGKL  300
PESLFDSHGE IDSEDIFCAK CGSKDLPLDN DIILCDGACE RGFHQFCLEP PLLKEDIPPG  360
DEGWICPGCD CKIDCIDMLK DFQGTKISHT DSWEKIFPEA AAAASGKTLD NGSGSSSDDS  420
DDDDYDPDKP DAVEKVEGDE SSSDESNYFS ASDDLAASLN NEKYLGLPSD DSEDDDFDPS  480
ALDPDKQAEQ ESSSSDFTSD SEDLGALLDD TEAGEDLGHI SPSSYQNQSS TGSKEENVKV  540
GGTKRQSLKD ELSYLLETSG EPVSGRRHVE RWDYKSLHDE TYGNSSSDSS DEDFVDTTAP  600
KRRRIDREKT EVTSPNKTPI TENNMKAKDE NQKESKHLRE RTRKNIGDTI ESSSKVGSAS  660
TGTKRSANKR LGEAITQRLY ASFNENQYPE RAVKENLAKE LGLKIQQITS GIKFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207217EKKKRGRKKKP
2600604KRRRI
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088190.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088190.10.0pathogenesis-related homeodomain protein isoform X2
SwissprotP487861e-130PRH_PETCR; Pathogenesis-related homeodomain protein
TrEMBLA0A022RBH90.0A0A022RBH9_ERYGU; Uncharacterized protein
STRINGMigut.B00404.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-90Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain