PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088187.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HB-PHD
Protein Properties Length: 835aa    MW: 92832 Da    PI: 4.7884
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.49e-126767171253
                     HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     +++L + F++n+yp ++ +e LAk+lgL+ +qV+ WF N R 
  XP_011088187.1 676 TQRLYASFNENQYPERAVKENLAKELGLKIQQVSKWFENARW 717
                     789************************************995 PP
2PHD39.61.2e-13317372151
                     SBTTTSSTCT..TSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgksde..egelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ Cg++d   +++++lCdg C++ fH+ Cl+++l +e++p g   w+C+ C++k
  XP_011088187.1 317 FCAKCGSKDLplDNDIILCDGaCERGFHQFCLEPPLLKEDIPPGdeGWICPGCDCK 372
                     699****44455********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.21E-13307375IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.1E-12314371IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.994315372IPR019787Zinc finger, PHD-finger
PfamPF006285.8E-11317372IPR019787Zinc finger, PHD-finger
CDDcd155044.41E-27317369No hitNo description
SMARTSM002491.9E-9317370IPR001965Zinc finger, PHD-type
PROSITE patternPS013590318369IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.606.9E-14656716IPR009057Homeodomain-like
SuperFamilySSF466896.42E-12660724IPR009057Homeodomain-like
PROSITE profilePS5007113.086662722IPR001356Homeobox domain
SMARTSM003893.7E-9664726IPR001356Homeobox domain
CDDcd000863.75E-10665716No hitNo description
PfamPF000462.6E-9676717IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MGLIKIGTQD PESNMIEPLE TSENLAQDPK SGPLTPANYK MDSETLVTET MEKKEVTGSQ  60
NFRKNIGSVE EISDQIKETG PNPEDISQNL DAEKEEPPLE SAKTLSVAQN LEVISQNGLT  120
NLENMCISPE AASANHGCGK LETVHIDETK NSGQLGTEDR GCSVQSRKRK AGLKSPVTSS  180
WVLRSKSQEK PKAPEPNENV KEDSANGEKK KRGRKKKPMQ KTTVNEFSRT KTHLRYLLHR  240
IKYEQSLIDA YSAEGWKGQS LDKLKPEKEL QRAKSHILRY KLKIRALIQR LDMSLAVGKL  300
PESLFDSHGE IDSEDIFCAK CGSKDLPLDN DIILCDGACE RGFHQFCLEP PLLKEDIPPG  360
DEGWICPGCD CKIDCIDMLK DFQGTKISHT DSWEKIFPEA AAAASGKTLD NGSGSSSDDS  420
DDDDYDPDKP DAVEKVEGDE SSSDESNYFS ASDDLAASLN NEKYLGLPSD DSEDDDFDPS  480
ALDPDKQAEQ ESSSSDFTSD SEDLGALLDD TEAGEDLGHI SPSSYQNQSS TGSKEENVKV  540
GGTKRQSLKD ELSYLLETSG EPVSGRRHVE RWDYKSLHDE TYGNSSSDSS DEDFVDTTAP  600
KRRRIDREKT EVTSPNKTPI TENNMKAKDE NQKESKHLRE RTRKNIGDTI ESSSKVGSAS  660
TGTKRSANKR LGEAITQRLY ASFNENQYPE RAVKENLAKE LGLKIQQVSK WFENARWSFQ  720
HRSRVGSNSD EKPPEPQPTI STDNHSSNQN MELQESSALR AREHITEAKL DNLATNSCKE  780
NSGTRDTRKR RAKIDQAPDD IHVDDKTQEQ KMLVDMRSPQ PCSSKRQTRS SNSVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207217EKKKRGRKKKP
2600604KRRRI
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088187.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088187.10.0pathogenesis-related homeodomain protein isoform X1
RefseqXP_011088188.10.0pathogenesis-related homeodomain protein isoform X1
SwissprotP487861e-142PRH_PETCR; Pathogenesis-related homeodomain protein
TrEMBLA0A2G9G1840.0A0A2G9G184_9LAMI; PHD Zn-finger protein
STRINGMigut.B00404.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-89Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain