PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011088059.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 249aa MW: 27356.1 Da PI: 7.7064

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088059.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.3	6.5e-30	42	142	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C+++Cvl++ + p++q++++ +v+k+FG++ ++++l+++p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++l+q+ XP_011088059.1 42 SCNGCRILRKGCNDNCVLRQSLqafesPQAQANATLFVAKFFGRAGLMSFLSSVPQSHRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWNLCQS 136 6*******************99999999*************************************************************** PP DUF260 91 kaelal 96 +++++l XP_011088059.1 137 AVDTVL 142 998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.559	41	147	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-25	42	139	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MVASSSTPPL YIFLISLHSS PLPLNPLSQT EFLVHVPDRI MSCNGCRILR KGCNDNCVLR 60 QSLQAFESPQ AQANATLFVA KFFGRAGLMS FLSSVPQSHR PALFQSLLFE ACGRTVNPVN 120 GAVGLLWTGN WNLCQSAVDT VLRGGIPRSL PEFSGLAQSP ELDEYNNDDL YGSRDLKVGS 180 NDERRGLDLR LTAGFPARMT GRGRSKRRPA SPSEESETTT MESGFVCGQD LVEKEQVGCH 240 ETKLLRLFF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088059.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088059.1	0.0	LOB domain-containing protein 37-like
Swissprot	Q9FN11	3e-59	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A2G9G6N3	1e-100	A0A2G9G6N3_9LAMI; Uncharacterized protein
STRING	XP_009625187.1	1e-89	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-61	LOB domain-containing protein 38

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]