PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087974.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26888.8 Da    PI: 9.4796
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087974.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.21.1e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstgkly+++s
  XP_011087974.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGKLYDFAS 59
                    8***********************************************86 PP
2K-box83.25.8e-28831701198
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +++ + +q+e+a L+++++ Lq+++R+llGe+L+ Ls+k+Lq+Le+qLe slk +R kK++ l+e+i+el  k   +++en +L+kk+
  XP_011087974.1  83 TSEIKFWQREAASLRQQLQYLQESHRQLLGEELSGLSIKDLQNLENQLEMSLKGVRMKKEQALTEEIKELNLKGSLIHQENIELHKKI 170
                     67899*********************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.24161IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-34291IPR002100Transcription factor, MADS-box
CDDcd002653.45E-45276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-293859IPR002100Transcription factor, MADS-box
PfamPF014865.0E-2684170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.2586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGKLYDFAST  60
SMKSVIDRYN KLKEEHYHLL HPTSEIKFWQ REAASLRQQL QYLQESHRQL LGEELSGLSI  120
KDLQNLENQL EMSLKGVRMK KEQALTEEIK ELNLKGSLIH QENIELHKKI NLVRQENAEL  180
HKKVYGPGGI SEENRVGHIT HGINKEYDLH APINLELSQP QNEKSDTPDL MKLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-22176176MEF2C
5f28_B1e-22176176MEF2C
5f28_C1e-22176176MEF2C
5f28_D1e-22176176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087974.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087974.21e-170MADS-box transcription factor 23-like
RefseqXP_020551897.11e-170MADS-box transcription factor 23-like
RefseqXP_020551898.11e-170MADS-box transcription factor 23-like
RefseqXP_020551899.11e-170MADS-box transcription factor 23-like
SwissprotQ6EP491e-103MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A022PSB51e-131A0A022PSB5_ERYGU; Uncharacterized protein
STRINGMigut.B00527.1.p1e-132(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-101AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]