PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087962.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 308aa    MW: 33535.3 Da    PI: 5.8737
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.75.6e-17229265135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgpdg++tLCnaCGl+++ kg+
  XP_011087962.1 229 CRHCGISSksTPMMRRGPDGPRTLCNACGLKWANKGV 265
                     *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.45893128IPR010399Tify domain
SMARTSM009794.2E-1093128IPR010399Tify domain
PfamPF062004.3E-1295127IPR010399Tify domain
PROSITE profilePS5101713.275160202IPR010402CCT domain
PfamPF062036.2E-16160202IPR010402CCT domain
SMARTSM004016.7E-13223277IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.196223271IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-12224279No hitNo description
Gene3DG3DSA:3.30.50.101.9E-15227270IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.54E-14228271No hitNo description
PfamPF003208.6E-15229265IPR000679Zinc finger, GATA-type
PROSITE patternPS003440229256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MYGPPHASMN DTTTVQAPRP LNPHIDDNDD DDEDVVECSN GEESVDNPPS QIRYDLPNNS  60
HSPHALPATG VMEPVDPVAS HALYPSDMGP AAGEAGADQL TLSFQGEVFV FDSVSPEKVQ  120
AVLLLLGGYE VPTGVPSPGM TPQNYRNLGD YPGKSSQPQR AASLIRFREK RKERCFDKKI  180
RYTVRKEVAL RMQRKKGQFT SSKSLPEELG SSSADWNGSS AQEEQETSCR HCGISSKSTP  240
MMRRGPDGPR TLCNACGLKW ANKGVLRDLS KLPIVEAQHH AMKINSETNS KDTLAPSTNI  300
ITSSTGEN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087962.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087962.10.0GATA transcription factor 24-like isoform X2
SwissprotQ8GXL73e-81GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2G9HMC11e-143A0A2G9HMC1_9LAMI; Uncharacterized protein
STRINGMigut.B00543.1.p1e-140(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.27e-85ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]