PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011087961.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GATA | ||||||||
Protein Properties | Length: 312aa MW: 33891.7 Da PI: 5.6339 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.7 | 5.7e-17 | 229 | 265 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgpdg++tLCnaCGl+++ kg+ XP_011087961.1 229 CRHCGISSksTPMMRRGPDGPRTLCNACGLKWANKGV 265 *****99999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.458 | 93 | 128 | IPR010399 | Tify domain |
SMART | SM00979 | 4.2E-10 | 93 | 128 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.4E-12 | 95 | 127 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.275 | 160 | 202 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.4E-16 | 160 | 202 | IPR010402 | CCT domain |
SMART | SM00401 | 6.7E-13 | 223 | 277 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.196 | 223 | 271 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.13E-12 | 224 | 274 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.0E-15 | 227 | 270 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.26E-14 | 228 | 271 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 229 | 256 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.7E-15 | 229 | 265 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MYGPPHASMN DTTTVQAPRP LNPHIDDNDD DDEDVVECSN GEESVDNPPS QIRYDLPNNS 60 HSPHALPATG VMEPVDPVAS HALYPSDMGP AAGEAGADQL TLSFQGEVFV FDSVSPEKVQ 120 AVLLLLGGYE VPTGVPSPGM TPQNYRNLGD YPGKSSQPQR AASLIRFREK RKERCFDKKI 180 RYTVRKEVAL RMQRKKGQFT SSKSLPEELG SSSADWNGSS AQEEQETSCR HCGISSKSTP 240 MMRRGPDGPR TLCNACGLKW ANKGVLRDLS KLPIVEAQHH AMKAGEVINS ETNSKDTLAP 300 STNIITSSTG EN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011087961.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087961.1 | 0.0 | GATA transcription factor 24-like isoform X1 | ||||
Swissprot | Q8GXL7 | 6e-81 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A2G9HMC1 | 1e-147 | A0A2G9HMC1_9LAMI; Uncharacterized protein | ||||
STRING | Migut.B00543.1.p | 1e-138 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2672 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-84 | ZIM-like 1 |
Publications ? help Back to Top | |||
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