PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011087568.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 710aa MW: 75503.5 Da PI: 7.3178 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50 | 5.4e-16 | 447 | 493 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq XP_011087568.1 447 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 493 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.40E-17 | 439 | 497 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-20 | 440 | 505 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-20 | 440 | 501 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.228 | 443 | 492 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-13 | 447 | 493 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-17 | 449 | 498 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 710 aa Download sequence Send to blast |
MPLSEFLRLA RGKLESGRQK PCPSDPSSRA EGDVVELVWE NGQIMMQGQS SRVTQSPVRN 60 SFSSNTHRVR DAGVVNSTSA RIEKFGGVES ILDDMLPVVP SGDLDLSQDD EMVPWLSYPM 120 VDALPQDYSS DLLPGISGVT TNGLSTQNSF VSVEKRSSCN QTVSNSHNGG NTLKASSPKT 180 RPFFSWPPQP SQTSVALGSG VSDIISNSMS NHPDDIYRNP AQGRDVVNNS TSMKMQRQNI 240 GPATNNSNLL NFSNFTRPAG LVKANPPNSG GIPASVSSGV ERMGVKEKGS AIGSSNPLKS 300 SSLERFNSTQ KDIDFHGSSA MLAIVNSRKP AVKAPKESYT PDRTENLCRE TSIKNDKPQI 360 VSDSANSTKA VPDGERTVEP MVASSSVGSG YSADRVSCEK AHNSKRKFGD VEESECRSDD 420 IETESVGVKK STPARGTGSK RSRAAEVHNL SERRRRDRIN EKMRALQELI PNCNKADKAS 480 MLDEAIEYLK TLQLQVQIMS MGAGLCMPPM MFPTGMQHVH PAHVPHFSPM GVGIGMGMGF 540 GMGMLDMNGG SPGCPVFPVP PMQVPHFPSP MSGPGNFQRI PGPNLPIYGQ PGQGLANSVP 600 RAPVVPLTGK PPGPSATGSG AFRSGSHNEV SSAAPTLNSG DPVIDKNAQL MCNAEASTPV 660 NHKSNQLQAT NEVVDQSAAV QENKQATDAT CPAALTSTTA TDTSKEPGCD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 451 | 456 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011087568.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087568.1 | 0.0 | transcription factor PIF3 isoform X3 | ||||
TrEMBL | A0A0H3YC53 | 0.0 | A0A0H3YC53_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | VIT_14s0060g00260.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 3e-46 | phytochrome interacting factor 3 |