PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087566.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 743aa    MW: 79155.5 Da    PI: 6.6743
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087566.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.7e-16447493455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  XP_011087566.1 447 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 493
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.78E-17439497No hitNo description
Gene3DG3DSA:4.10.280.102.2E-20440501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-20440505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-13447493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17449498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MPLSEFLRLA RGKLESGRQK PCPSDPSSRA EGDVVELVWE NGQIMMQGQS SRVTQSPVRN  60
SFSSNTHRVR DAGVVNSTSA RIEKFGGVES ILDDMLPVVP SGDLDLSQDD EMVPWLSYPM  120
VDALPQDYSS DLLPGISGVT TNGLSTQNSF VSVEKRSSCN QTVSNSHNGG NTLKASSPKT  180
RPFFSWPPQP SQTSVALGSG VSDIISNSMS NHPDDIYRNP AQGRDVVNNS TSMKMQRQNI  240
GPATNNSNLL NFSNFTRPAG LVKANPPNSG GIPASVSSGV ERMGVKEKGS AIGSSNPLKS  300
SSLERFNSTQ KDIDFHGSSA MLAIVNSRKP AVKAPKESYT PDRTENLCRE TSIKNDKPQI  360
VSDSANSTKA VPDGERTVEP MVASSSVGSG YSADRVSCEK AHNSKRKFGD VEESECRSDD  420
IETESVGVKK STPARGTGSK RSRAAEVHNL SERRRRDRIN EKMRALQELI PNCNKADKAS  480
MLDEAIEYLK TLQLQVQIMS MGAGLCMPPM MFPTGMQHVH PAHVPHFSPM GVGIGMGMGF  540
GMGMLDMNGG SPGCPVFPVP PMQVPHFPSP MSGPGNFQRI PGPNLPIYGQ PGQGLANSVP  600
RAPVVPLTGK PPGPSATGSG AFRSGSHNEV SSAAPTLNSG DPVIDKNAQL MCNAEASTPV  660
NHKSNQLQAT NEVVDQSAAV QENKQATDAT CPAALTSTTA TDTSKEPGSS TILDHVEEII  720
PNSQNGLSAY EVEHCLSYET PVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1451456ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087566.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087566.10.0transcription factor PIF3 isoform X1
RefseqXP_011087567.10.0transcription factor PIF3 isoform X1
TrEMBLA0A0H3YC530.0A0A0H3YC53_SALMI; Basic helix-loop-helix transcription factor
STRINGVIT_14s0060g00260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-46phytochrome interacting factor 3