PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087249.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 332aa    MW: 36925.2 Da    PI: 7.2228
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.8e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++++G+g+W+++++  g+ R+ k+c++rw +yl
   XP_011087249.1 14 KGPWTPEEDIVLVSYIQEHGPGNWRAVPSNTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.83.9e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++ +v++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_011087249.1  67 RGNFTQQEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.276961IPR017930Myb domain
SuperFamilySSF466891.61E-3011108IPR009057Homeodomain-like
SMARTSM007176.2E-141363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001671.04E-101661No hitNo description
PROSITE profilePS5129424.35962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2465116IPR009057Homeodomain-like
SMARTSM007171.9E-1566114IPR001005SANT/Myb domain
PfamPF002497.6E-1567112IPR001005SANT/Myb domain
CDDcd001671.19E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRPPCCDKF GVKKGPWTPE EDIVLVSYIQ EHGPGNWRAV PSNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TQQEEKMIVH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLGIKT  120
QGDDHDKSEN DGGSCTDSQS ISKGKWERRL QTDIHMAKQA LCEALSLHRS DKNSSTDSTI  180
CSETKLIQTS TYASSAENIA RLLENWSKKS PSLSQRGSCE STHSTSSFNN YNPSAGISSS  240
ASEAAISTAT TTRFLNSPNF IEDQEAKFES GNANGILLQE DDHQRKHNYK LDMTQVPLGL  300
LEKWLFDDAG GQGQDGDMIM EMALVGGTAD LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251411627128MYB TRANSFORMING PROTEIN
1mse_C2e-25141164105C-Myb DNA-Binding Domain
1msf_C2e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087249.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087249.10.0myb-related protein 306
SwissprotP813921e-129MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A059PRK01e-138A0A059PRK0_SALMI; MYB-related transcription factor
TrEMBLA0A0K1SBE91e-138A0A0K1SBE9_REHGL; R2R3-MYB protein
STRINGMigut.D01820.1.p1e-129(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-101myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]