PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011087133.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 284aa MW: 32865.7 Da PI: 9.6076 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 14 | 58 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g W + Ede+l ++v+++G+++W++Ia+ + gR++k+c++rw++ XP_011087133.1 14 GHWRPAEDEKLRELVERYGPHNWNAIAQNLH-GRSGKSCRLRWFNQ 58 57*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 59.4 | 8e-19 | 65 | 108 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ +++ +G++ W+ Iar+++ gRt++ +k++w+ XP_011087133.1 65 RSPFTEEEEERLLACHRIHGNR-WAIIARHFP-GRTDNAVKNHWHV 108 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.712 | 1 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-13 | 12 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-27 | 14 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.63E-30 | 14 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.18E-13 | 16 | 57 | No hit | No description |
Pfam | PF13921 | 1.1E-16 | 16 | 76 | No hit | No description |
PROSITE profile | PS51294 | 27.829 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-16 | 64 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.02E-12 | 67 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-22 | 67 | 113 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MSWLHRSIGG AALGHWRPAE DEKLRELVER YGPHNWNAIA QNLHGRSGKS CRLRWFNQLD 60 PRINRSPFTE EEEERLLACH RIHGNRWAII ARHFPGRTDN AVKNHWHVIM ARKCRERSKL 120 HTKRAYSHNQ QPSSMISKHH NNVNSAAVCR GKSLLSFSPS LVEKLPAHRI FDNPPSSYSY 180 QLLPHWKDHH HHQSTKVLFY HPKIDEESRS SSKAVEFYDF LQVNTDSNRS EVIDHANAIR 240 NKDNEEEVEQ EAAAHLHINQ TNKSSPAPPF IDFLSVDGRS SSSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-31 | 14 | 114 | 8 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00145 | DAP | Transfer from AT1G17950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011087133.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087133.1 | 0.0 | transcription factor MYB52-like | ||||
Swissprot | Q6R0C4 | 3e-79 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | A0A2G9HLB1 | 1e-101 | A0A2G9HLB1_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | POPTR_0012s03650.1 | 7e-92 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-81 | myb domain protein 52 |
Publications ? help Back to Top | |||
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