PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087133.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 284aa    MW: 32865.7 Da    PI: 9.6076
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161458247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     g W + Ede+l ++v+++G+++W++Ia+ +  gR++k+c++rw++ 
   XP_011087133.1 14 GHWRPAEDEKLRELVERYGPHNWNAIAQNLH-GRSGKSCRLRWFNQ 58
                     57*****************************.***********996 PP

2Myb_DNA-binding59.48e-1965108146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ +++ +G++ W+ Iar+++ gRt++ +k++w+ 
   XP_011087133.1  65 RSPFTEEEEERLLACHRIHGNR-WAIIARHFP-GRTDNAVKNHWHV 108
                      789*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.712159IPR017930Myb domain
SMARTSM007171.9E-131261IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-271466IPR009057Homeodomain-like
SuperFamilySSF466893.63E-3014106IPR009057Homeodomain-like
CDDcd001675.18E-131657No hitNo description
PfamPF139211.1E-161676No hitNo description
PROSITE profilePS5129427.82960114IPR017930Myb domain
SMARTSM007171.2E-1664112IPR001005SANT/Myb domain
CDDcd001673.02E-1267107No hitNo description
Gene3DG3DSA:1.10.10.608.4E-2267113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSWLHRSIGG AALGHWRPAE DEKLRELVER YGPHNWNAIA QNLHGRSGKS CRLRWFNQLD  60
PRINRSPFTE EEEERLLACH RIHGNRWAII ARHFPGRTDN AVKNHWHVIM ARKCRERSKL  120
HTKRAYSHNQ QPSSMISKHH NNVNSAAVCR GKSLLSFSPS LVEKLPAHRI FDNPPSSYSY  180
QLLPHWKDHH HHQSTKVLFY HPKIDEESRS SSKAVEFYDF LQVNTDSNRS EVIDHANAIR  240
NKDNEEEVEQ EAAAHLHINQ TNKSSPAPPF IDFLSVDGRS SSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31141148108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087133.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087133.10.0transcription factor MYB52-like
SwissprotQ6R0C43e-79MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A2G9HLB11e-101A0A2G9HLB1_9LAMI; Transcription factor, Myb superfamily
STRINGPOPTR_0012s03650.17e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-81myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]