PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087104.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARR-B
Protein Properties Length: 543aa    MW: 60722.7 Da    PI: 6.8604
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087104.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.91.9e-22199252155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kprl W  +LH++F +av+q+ G +k  Pk+ilelm+v++Lt+e+v+SHLQkYRl
  XP_011087104.1 199 KPRLFWDMDLHQKFEKAVHQI-GLNKVGPKKILELMGVPSLTRENVASHLQKYRL 252
                     79*******************.9*******************************8 PP
2Response_reg80.26.9e-27201281109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+v+D+p+ +++++++l+k +y +v++++  +eal+ll++++  +D+++ D++mp+mdG++ll++   +  +lp+i+++  g+ + + + ++ G
  XP_011087104.1  20 VLVVEDDPTCLKIVEKMLKKCNY-DVTTCKLTQEALDLLQARKdgFDIVISDVNMPDMDGFKLLEHVGGKM-DLPVIMMSVDGTTSRVMKGIQDG 112
                     89*********************.***************999999**********************7755.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp  ++el +
  XP_011087104.1 113 ACDYLLKPLRIKELQN 128
                     ***********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.6E-1311529IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.9E-4217150No hitNo description
SuperFamilySSF521724.7E-3517140IPR011006CheY-like superfamily
SMARTSM004481.6E-2918130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.55519134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-2320128IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.62E-2721134No hitNo description
SuperFamilySSF466893.4E-16197256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-25197257IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-20199252IPR006447Myb domain, plants
PfamPF002491.4E-5204251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MDSSGFSSPR SGSFPAGLRV LVVEDDPTCL KIVEKMLKKC NYDVTTCKLT QEALDLLQAR  60
KDGFDIVISD VNMPDMDGFK LLEHVGGKMD LPVIMMSVDG TTSRVMKGIQ DGACDYLLKP  120
LRIKELQNIW QHVIRKRMHG ARDTEGQESL DVTQMTRNGK QPSNDHCSFS RCIVSGKKRK  180
GVENKCHDGE YGDPSSKKKP RLFWDMDLHQ KFEKAVHQIG LNKVGPKKIL ELMGVPSLTR  240
ENVASHLQKY RLYLSRMQEE NKLKAVSGGL KFSDIYSKEP AGNVCLQSSI SRNSLTVPQN  300
VVYVHEKEIM IHNHDAKICN ANVKGVLSVA TEPKTALSAD MTDTPLSSNL RMSSNHSFGP  360
LPSEVRPESK IDAQYSWSGG VPSFQFKQET RPHFQSEQLF DHLPLPMPQL QADSVSHNST  420
SSSRETDKPI EPNINLYYAQ NRSHVKVENS AALFSVQPEP FPCSVWGTTN YSLEQNLYDN  480
MESSQKNLIA GIGSALRLSD EEFISYQNDF SPPDPGLVNT ESVDFSNQGL IVDAPYFHNS  540
VNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16195257163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087104.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087104.10.0two-component response regulator ORR26
SwissprotQ5N6V81e-116ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A2R6RED21e-163A0A2R6RED2_ACTCH; Two-component response regulator like
STRINGVIT_01s0010g02230.t011e-158(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.12e-97response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]