PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011087090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | YABBY | ||||||||
Protein Properties | Length: 223aa MW: 25093.8 Da PI: 7.2655 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 175.7 | 2.9e-54 | 8 | 167 | 4 | 166 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesast 94 + +q+Cyv+C+fC+til+vsvP +sl++vvtv+CGhCt +lsvn+++a +l ++ sh + ++ + ++e +++ v +++ + + XP_011087090.1 8 LDLQDQICYVKCGFCSTILLVSVPCSSLSMVVTVKCGHCTRILSVNMMTARlvplHLFSSLSH--------QEHTVQPKREVCSEEVLADK-KAA 93 5789******************************************99876444444444444........33334444444433333332.233 PP YABBY 95 svsseklsenedeev..prvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 ls ++deev + + +PPek+qr+Psayn fikeei+r+k + P+++h++afsaaaknWah P+ XP_011087090.1 94 IGCFPPLSFSSDEEVdeDSNQVIHKPPEKKQRAPSAYNHFIKEEIKRLKIEYPNMTHKQAFSAAAKNWAHCPQS 167 333334444444444003334478************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.2E-56 | 11 | 168 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.62E-8 | 114 | 167 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.5E-6 | 118 | 168 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSTLDNLLDL QDQICYVKCG FCSTILLVSV PCSSLSMVVT VKCGHCTRIL SVNMMTARLV 60 PLHLFSSLSH QEHTVQPKRE VCSEEVLADK KAAIGCFPPL SFSSDEEVDE DSNQVIHKPP 120 EKKQRAPSAY NHFIKEEIKR LKIEYPNMTH KQAFSAAAKN WAHCPQSQYR DGEVHGYAGE 180 PDRNLAMVKQ STEDVVCNEV HCFGNGFHDT KALKQCICRK PHF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011087090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY451400 | 4e-54 | AY451400.1 Antirrhinum majus YABBY-like transcription factor INNER NO OUTER-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087090.1 | 1e-168 | axial regulator YABBY 4 | ||||
TrEMBL | A0A2G9GYG9 | 1e-105 | A0A2G9GYG9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.L01462.1.p | 3e-78 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 5e-52 | YABBY family protein |