PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011087065.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | Whirly | ||||||||
Protein Properties | Length: 250aa MW: 28357 Da PI: 9.7864 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 216.4 | 2.7e-67 | 73 | 210 | 1 | 138 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 svyk+kaal+v+++ p+f+ ldsg++kl+++G++ll++a+a ++r+ydW++kq+f+ls+te++++++l++++sceffhdp++++s+eG+vrk+lk XP_011087065.1 73 SVYKGKAALTVEPRPPEFSPLDSGAFKLSKEGFVLLQFAPASGVRQYDWGRKQVFSLSVTEIGNIISLGARDSCEFFHDPFKGKSDEGRVRKVLK 167 79********************************************************************************************* PP Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138 vePlpdGsG+f+nlsv+n+l++++es+++P++kaefavl s + XP_011087065.1 168 VEPLPDGSGHFFNLSVQNKLTNVDESIYIPITKAEFAVLVSSF 210 ***************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 8.1E-79 | 62 | 234 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 9.42E-80 | 66 | 250 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 3.6E-61 | 74 | 207 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
FRHNHLYSFP QKKKCGFSYH PSSRSVKKYC FNVKAQYLTP QEQNHQQQRF SSYESPFPSQ 60 PGQLPPRVYV GYSVYKGKAA LTVEPRPPEF SPLDSGAFKL SKEGFVLLQF APASGVRQYD 120 WGRKQVFSLS VTEIGNIISL GARDSCEFFH DPFKGKSDEG RVRKVLKVEP LPDGSGHFFN 180 LSVQNKLTNV DESIYIPITK AEFAVLVSSF NFVVPYLLGW HTFASSIKPE DANRANNTNP 240 RSGAEFEWSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 1e-117 | 62 | 249 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 1e-117 | 62 | 249 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 1e-117 | 62 | 249 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 1e-117 | 62 | 249 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011087065.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087065.2 | 1e-166 | single-stranded DNA-binding protein WHY1, chloroplastic | ||||
Swissprot | Q9LL85 | 1e-118 | WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A022QN47 | 1e-143 | A0A022QN47_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L01333.1.p | 1e-144 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7731 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-119 | ssDNA-binding transcriptional regulator |