PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011087061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 290aa MW: 31229.3 Da PI: 9.1813 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18 | 5.2e-06 | 37 | 60 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++Gd C+F H XP_011087061.1 37 KSKPCTKFFSTSGCSFGDACHFQH 60 7789*******************9 PP | |||||||
2 | zf-CCCH | 24.6 | 4.3e-08 | 96 | 121 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k +lC+ f C++Gd+C+FaH++ XP_011087061.1 96 KSKLCNKFNTPEGCRFGDKCHFAHSE 121 6789********************95 PP | |||||||
3 | zf-CCCH | 22.2 | 2.4e-07 | 257 | 281 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C f + G C +G+rC+FaH+ XP_011087061.1 257 YKKKMCEKFPK-GLCTFGERCHFAHS 281 8999*******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.87 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.967 | 35 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 36 | 61 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-6 | 37 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.54 | 43 | 60 | No hit | No description |
SuperFamily | SSF90229 | 7.46E-8 | 93 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-12 | 93 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.347 | 94 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.042 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-5 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 6.72E-15 | 159 | 234 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.7E-11 | 162 | 232 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.844 | 163 | 227 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 2.8E-15 | 163 | 231 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 5.2E-11 | 165 | 227 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.75E-15 | 165 | 232 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 9.8E-14 | 253 | 288 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-8 | 254 | 287 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.046 | 256 | 282 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.389 | 257 | 283 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.052 | 262 | 280 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MDFGRKRGRL DAAFSGNGGF KKSKEEMDSF TTGVGSKSKP CTKFFSTSGC SFGDACHFQH 60 YVPGYSAHAQ LANLGANNAL PVGRNAFTDG PTPTMKSKLC NKFNTPEGCR FGDKCHFAHS 120 EMELGMPPVP GYEDPRVMGQ IGGFPQRLES SQHGLPVGNF GASATAKISI DASFAGAIIG 180 KNGVNSRQIC RQTGVKLSIK DHDTDPNQRN IELEGTFDQI KEASAVVRHL IMNISASSSR 240 TEKPMGAPTQ GASPSHYKKK MCEKFPKGLC TFGERCHFAH SASELRNPLA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011087061.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087061.1 | 0.0 | zinc finger CCCH domain-containing protein 14 isoform X1 | ||||
Swissprot | Q7F8R0 | 3e-97 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A2G9I5Y3 | 1e-155 | A0A2G9I5Y3_9LAMI; Uncharacterized protein | ||||
STRING | Migut.B01362.1.p | 1e-154 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 9e-71 | C3H family protein |