PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086917.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 29810.7 Da    PI: 8.4653
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086917.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCda+v +i+fs++gkl+ey++
  XP_011086917.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVGLIVFSTKGKLFEYAT 59
                    79***********************************************86 PP

2K-box101.41.2e-33761742100
           K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     ++++ k+ e +   s++ e+akLk++ie Lq++qRh++Ge+L++Ls+keL++Le+qL+ slk+iR++Kn+++ e+i+elqkk k+lqe+n+ L k
  XP_011086917.1  76 AERQLKEPELESPVSWTLEHAKLKARIEVLQKNQRHYMGEELDNLSMKELHNLEHQLDVSLKHIRTRKNQIMNESISELQKKDKALQEQNNLLAK 170
                     556666766777789******************************************************************************** PP

           K-box  97 klee 100
                     k++e
  XP_011086917.1 171 KIKE 174
                     *987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.917161IPR002100Transcription factor, MADS-box
CDDcd002655.94E-41279No hitNo description
SuperFamilySSF554555.89E-34292IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-30323IPR002100Transcription factor, MADS-box
PfamPF003195.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.46988178IPR002487Transcription factor, K-box
PfamPF014869.8E-2890172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVGLIVFST KGKLFEYATD  60
SCMERILERY ERYSYAERQL KEPELESPVS WTLEHAKLKA RIEVLQKNQR HYMGEELDNL  120
SMKELHNLEH QLDVSLKHIR TRKNQIMNES ISELQKKDKA LQEQNNLLAK KIKEREKESA  180
RTTTWEQQNH DLNSSHFGLP QQNQDLNTSC FDVAQPLSSV NVSEIYLGPG ENNGEVEATQ  240
RQNQSSNSVI PPWMLHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-21174173Myocyte-specific enhancer factor 2B
1tqe_Q3e-21174173Myocyte-specific enhancer factor 2B
1tqe_R3e-21174173Myocyte-specific enhancer factor 2B
1tqe_S3e-21174173Myocyte-specific enhancer factor 2B
6byy_A3e-21174173MEF2 CHIMERA
6byy_B3e-21174173MEF2 CHIMERA
6byy_C3e-21174173MEF2 CHIMERA
6byy_D3e-21174173MEF2 CHIMERA
6bz1_A3e-21174173MEF2 CHIMERA
6bz1_B3e-21174173MEF2 CHIMERA
6bz1_C3e-21174173MEF2 CHIMERA
6bz1_D3e-21174173MEF2 CHIMERA
6c9l_A3e-21174173Myocyte-specific enhancer factor 2B
6c9l_B3e-21174173Myocyte-specific enhancer factor 2B
6c9l_C3e-21174173Myocyte-specific enhancer factor 2B
6c9l_D3e-21174173Myocyte-specific enhancer factor 2B
6c9l_E3e-21174173Myocyte-specific enhancer factor 2B
6c9l_F3e-21174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086917.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086917.10.0truncated transcription factor CAULIFLOWER A
RefseqXP_011086918.10.0truncated transcription factor CAULIFLOWER A
SwissprotQ424291e-121AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2G9H5721e-158A0A2G9H572_9LAMI; MADS box transcription factor
STRINGXP_009625854.11e-131(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-100AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]