PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086822.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 22371 Da    PI: 9.4257
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+ks rqvtf+kRr+g+lKKA+ELSvLCd++v viifss+gkly y+s
  XP_011086822.1  9 KRIEDKSARQVTFTKRRKGLLKKAKELSVLCDVDVGVIIFSSRGKLYHYCS 59
                    79***********************************************96 PP
2K-box60.19e-21861721399
           K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      +++ + +++ L k  e Lq   R l   ++++L++k+L +Le+qLe++l +iR++K++lll++i++l +kek+l ee++ L++k++
  XP_011086822.1  86 GMQEAKSKYTGLLKSGELLQIVDRELGETCVNNLTVKDLVHLEKQLEDALIQIRATKTHLLLDSISNLHEKEKMLAEEKRHLEEKIA 172
                     5688889999999*********9*99999*******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.5E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.347161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-31276IPR002100Transcription factor, MADS-box
CDDcd002655.17E-37273No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-26323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.33387177IPR002487Transcription factor, K-box
PfamPF014861.1E-1588171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRRKLEIKR IEDKSARQVT FTKRRKGLLK KAKELSVLCD VDVGVIIFSS RGKLYHYCST  60
NSLTEILQQY QNCVAMGPGA QTAVRGMQEA KSKYTGLLKS GELLQIVDRE LGETCVNNLT  120
VKDLVHLEKQ LEDALIQIRA TKTHLLLDSI SNLHEKEKML AEEKRHLEEK IAGSKADGRT  180
NKMIMDLNVI ADSQMTEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19170169MEF2C
5f28_B1e-19170169MEF2C
5f28_C1e-19170169MEF2C
5f28_D1e-19170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086822.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086822.11e-143MADS-box transcription factor 7-like isoform X2
SwissprotQ7Y0403e-47EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A1S3X7B14e-69A0A1S3X7B1_TOBAC; agamous-like MADS-box protein AGL27 isoform X1
TrEMBLA0A1U7XSL94e-69A0A1U7XSL9_NICSY; agamous-like MADS-box protein AGL27 isoform X1
STRINGXP_009795052.17e-70(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-44MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]