PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011086813.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | SBP | ||||||||
Protein Properties | Length: 469aa MW: 51161.2 Da PI: 7.6108 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.1 | 6.7e-40 | 182 | 259 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C vegC+ dls+akeyhr+h+vC+ hsk+p+v+v gle+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+++ XP_011086813.1 182 RCVVEGCNIDLSTAKEYHRKHRVCDSHSKCPKVVVGGLERRFCQQCSRFHTLSEFDEKKRSCRRRLSDHNARRRKPHQ 259 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.7E-33 | 179 | 244 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.188 | 180 | 257 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.09E-37 | 181 | 262 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.6E-30 | 183 | 256 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MSHFAEMEWN SKWDWENFLG FGSKAIESPK KLQLADWTIV DDGQIDAGSF NLSAGGGNSG 60 ASDSDGGHVS SAKSSISAST DSSTKDGMQN PNFGLITFQG FSGNFSKKME MEGADVSGTS 120 PLMDASIGSV EPLIGLKLGK RTYFENSGAG GNVKTAPLSA MPTPATSLKK TKSLGQNLPI 180 PRCVVEGCNI DLSTAKEYHR KHRVCDSHSK CPKVVVGGLE RRFCQQCSRF HTLSEFDEKK 240 RSCRRRLSDH NARRRKPHQE AIQFNSTRLS SPFYEARQQI SFLLNNAPLI HSRNPANTTW 300 DGASNSKFTL TKGYHFKSNG DGGTDEQMHM PGINLPHAID MHGTAANDFL VSKSSIPTVL 360 DPGSKGPLMS SHLDAAPEYR CALSLLSSNS WSSCGPELMP VNNQMDELGT SVDQRMMHAT 420 PEGVPLSSSQ FWLTGHQPTQ PRVATNGNFQ EVQLLKTPYE ADFYSNILN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-28 | 183 | 256 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 238 | 255 | KKRSCRRRLSDHNARRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011086813.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086813.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A2G9H1C0 | 0.0 | A0A2G9H1C0_9LAMI; Uncharacterized protein | ||||
STRING | Migut.K00951.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4129 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-63 | squamosa promoter binding protein-like 2 |