PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011086806.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | SBP | ||||||||
Protein Properties | Length: 470aa MW: 51201.4 Da PI: 8.9251 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.1 | 3.4e-40 | 183 | 260 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C vegC+ dls+akeyhr+h+vC+ hsk+p+v+v g+e+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ XP_011086806.1 183 RCVVEGCNIDLSTAKEYHRKHRVCDSHSKCPKVVVGGIERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 260 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.5E-33 | 180 | 245 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.146 | 181 | 258 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.06E-38 | 182 | 263 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.8E-30 | 184 | 257 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MSHFAEMEWN SKWDWENFLG FGSKAMESPK KLQLADWTIV DDGQIDAGSF NLSAGGGNSG 60 ASDSDGGHVS SAKSSISAST DSSTKDGMQN ANFSLITFQG FSGNFSKKKE MKGAHVSGTS 120 PPLDASIGSV EPLIGLKLGK RTYFENSGAG GNVKTAPLPV MPTPSATPLK KTKSLGQNLP 180 IPRCVVEGCN IDLSTAKEYH RKHRVCDSHS KCPKVVVGGI ERRFCQQCSR FHSLSEFDEK 240 KRSCRRRLSD HNARRRKPQQ EAIQFNSTRL SSPFYEGRPQ ISFLLNDAPV INSKNPANST 300 WNSTSNSEFT LTKGYPLKSN GDGGTDEQMH MRGVKLPHVI NMHGTAANGV FASKSSMPTI 360 LNPGSKGPLT CSHLDAAPEY RRALSLLSSN SWGSCGPESM PVHDQMHEQG TNVAQPMMHA 420 TPEGVPLSSS QFWLTGHQPT QPRVATNSNF QEVQLLKTPY EPDFYSNMLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-27 | 184 | 257 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 239 | 256 | KKRSCRRRLSDHNARRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011086806.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086806.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_011086808.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_020551644.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A2G9H1C0 | 0.0 | A0A2G9H1C0_9LAMI; Uncharacterized protein | ||||
STRING | Migut.K00951.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-66 | squamosa promoter binding protein-like 2 |