PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011086359.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 328aa MW: 37018.3 Da PI: 6.4287 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.3 | 2e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed++l + ++ +G +W++ ++ g+ R++k+c++rw +yl XP_011086359.1 16 KGPWSPAEDLRLTNFIQIHGHSNWRALPKQAGLMRCGKSCRLRWINYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++++++ G++ W++Ia++++ gRt++++k+ w+++l XP_011086359.1 69 RGNFTPEEEQTIINLHNSIGNK-WSKIASYLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.501 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.44E-30 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-10 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-13 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.22E-8 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.505 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-27 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.47E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MGKGRAPCCD KSKVKKGPWS PAEDLRLTNF IQIHGHSNWR ALPKQAGLMR CGKSCRLRWI 60 NYLRPDVKRG NFTPEEEQTI INLHNSIGNK WSKIASYLPG RTDNEIKNVW NTHLKKRALT 120 YKKTTADHDS HKTDLVPSCT SSSITSSDAH NNVEKSAPSD QESQVKKSNE KQAEFLKLKP 180 NNHDQVKETL MSDSPTSSYA SNFSSLQENR PKNDPNKGKI EIPLDSDIDF WELLDSLDPL 240 HPEKAEENDP NQGQDLSRPG EKLDPGIEWF RFLEKELGLT NDAENLTSEE NLVATGPVQY 300 QEMNLEGGIS PVLDYFPIWP SSPQNLGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-25 | 16 | 118 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011086359.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086359.1 | 0.0 | transcription factor MYB63 | ||||
TrEMBL | A0A0K1SBG1 | 1e-119 | A0A0K1SBG1_REHGL; R2R3-MYB protein | ||||
STRING | XP_009593119.1 | 7e-83 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 2e-76 | myb domain protein 63 |