PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086359.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 328aa    MW: 37018.3 Da    PI: 6.4287
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086359.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-141663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed++l + ++ +G  +W++ ++  g+ R++k+c++rw +yl
   XP_011086359.1 16 KGPWSPAEDLRLTNFIQIHGHSNWRALPKQAGLMRCGKSCRLRWINYL 63
                     79********************************************97 PP

2Myb_DNA-binding52.21.4e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ ++++++  G++ W++Ia++++ gRt++++k+ w+++l
   XP_011086359.1  69 RGNFTPEEEQTIINLHNSIGNK-WSKIASYLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.5011163IPR017930Myb domain
SuperFamilySSF466898.44E-3014110IPR009057Homeodomain-like
SMARTSM007172.1E-101565IPR001005SANT/Myb domain
PfamPF002496.0E-131663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-231770IPR009057Homeodomain-like
CDDcd001672.22E-81863No hitNo description
PROSITE profilePS5129424.50564118IPR017930Myb domain
SMARTSM007171.9E-1468116IPR001005SANT/Myb domain
PfamPF002491.4E-1569114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-2771117IPR009057Homeodomain-like
CDDcd001673.47E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGKGRAPCCD KSKVKKGPWS PAEDLRLTNF IQIHGHSNWR ALPKQAGLMR CGKSCRLRWI  60
NYLRPDVKRG NFTPEEEQTI INLHNSIGNK WSKIASYLPG RTDNEIKNVW NTHLKKRALT  120
YKKTTADHDS HKTDLVPSCT SSSITSSDAH NNVEKSAPSD QESQVKKSNE KQAEFLKLKP  180
NNHDQVKETL MSDSPTSSYA SNFSSLQENR PKNDPNKGKI EIPLDSDIDF WELLDSLDPL  240
HPEKAEENDP NQGQDLSRPG EKLDPGIEWF RFLEKELGLT NDAENLTSEE NLVATGPVQY  300
QEMNLEGGIS PVLDYFPIWP SSPQNLGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-25161184105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086359.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086359.10.0transcription factor MYB63
TrEMBLA0A0K1SBG11e-119A0A0K1SBG1_REHGL; R2R3-MYB protein
STRINGXP_009593119.17e-83(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-76myb domain protein 63