PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086341.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YC
Protein Properties Length: 272aa    MW: 30133.1 Da    PI: 6.8004
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086341.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.72.2e-55851891102
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie++tdfknh+lPlarikki+kad+dv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdfl
  XP_011086341.1  85 QLQAFWANQmqeIEQTTDFKNHSLPLARIKKIMKADKDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 179
                     89******988889********************************************************************************* PP

           NF-YC  93 vdivprdelk 102
                     vdi+prdelk
  XP_011086341.1 180 VDIIPRDELK 189
                     *******975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.64E-3373179IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.8E-3799171IPR009072Histone-fold
PfamPF008083.5E-21107170IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDHSDQRQQF THHNQQQQQP AAGVVAGSGQ VAYASAPYQA APMVGTSAPA VTVSSPTQPP  60
AGFAPQQQLG YHQPQHFHSQ QQQQQLQAFW ANQMQEIEQT TDFKNHSLPL ARIKKIMKAD  120
KDVRMISAEA PVVFAKACEM FILELTLRSW IHTEENKRRT LQKNDIAAAI SRTDVFDFLV  180
DIIPRDELKE EGLGITKAAI PLVGSPDALP YYYVPPQPPI AAAGMMMGKP VDQAALYASQ  240
QPRPPLPFMP WPQSHTQSPS QQPPPQQQQG DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5893185395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086341.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086340.10.0nuclear transcription factor Y subunit C-2-like
RefseqXP_011086341.10.0nuclear transcription factor Y subunit C-2-like
RefseqXP_011086342.10.0nuclear transcription factor Y subunit C-2-like
RefseqXP_011086343.10.0nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG76e-80NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A4D9B5N41e-128A0A4D9B5N4_SALSN; Uncharacterized protein
STRINGXP_008346078.11e-121(Malus domestica)
STRINGXP_008356118.11e-121(Malus domestica)
STRINGXP_008372003.11e-121(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-74nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]