PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011086341.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NF-YC | ||||||||
Protein Properties | Length: 272aa MW: 30133.1 Da PI: 6.8004 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.7 | 2.2e-55 | 85 | 189 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie++tdfknh+lPlarikki+kad+dv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdfl XP_011086341.1 85 QLQAFWANQmqeIEQTTDFKNHSLPLARIKKIMKADKDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 179 89******988889********************************************************************************* PP NF-YC 93 vdivprdelk 102 vdi+prdelk XP_011086341.1 180 VDIIPRDELK 189 *******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.64E-33 | 73 | 179 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.8E-37 | 99 | 171 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.5E-21 | 107 | 170 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MDHSDQRQQF THHNQQQQQP AAGVVAGSGQ VAYASAPYQA APMVGTSAPA VTVSSPTQPP 60 AGFAPQQQLG YHQPQHFHSQ QQQQQLQAFW ANQMQEIEQT TDFKNHSLPL ARIKKIMKAD 120 KDVRMISAEA PVVFAKACEM FILELTLRSW IHTEENKRRT LQKNDIAAAI SRTDVFDFLV 180 DIIPRDELKE EGLGITKAAI PLVGSPDALP YYYVPPQPPI AAAGMMMGKP VDQAALYASQ 240 QPRPPLPFMP WPQSHTQSPS QQPPPQQQQG DS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-58 | 93 | 185 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 163 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011086341.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086340.1 | 0.0 | nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_011086341.1 | 0.0 | nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_011086342.1 | 0.0 | nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_011086343.1 | 0.0 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q8LCG7 | 6e-80 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A4D9B5N4 | 1e-128 | A0A4D9B5N4_SALSN; Uncharacterized protein | ||||
STRING | XP_008346078.1 | 1e-121 | (Malus domestica) | ||||
STRING | XP_008356118.1 | 1e-121 | (Malus domestica) | ||||
STRING | XP_008372003.1 | 1e-121 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-74 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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