PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086339.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 541aa    MW: 60199.2 Da    PI: 4.5957
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086339.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.27.9e-1081635341374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilk 92 
                     lv+lLl+cAeav  +d++la+++L+++   ++  gd++qR+ ++f+ +L++rl+  ++  ++ + +s++ + +    +e++ a++l+++++P++ 
  XP_011086339.1 163 LVHLLLACAEAVGCRDTQLADSILTQIWPCVNTWGDSLQRVSHCFAMGLKSRLSLLQNVNSNGFFTSKAIDVSlitREEKIEAFTLLHQTTPYIS 257
                     68***************************************************984444444444444433335778999*************** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.r 185
                     f+ ++aN aI +a+ g++ +HiiD+++++ lQWp+L ++LasR++gpp ++RiTg+     +++ ele+  + L++ A +lg+++ef++l+++ +
  XP_011086339.1 258 FGLMAANDAISQAATGKDFLHIIDLGMEHNLQWPCLVRTLASRTDGPPkTIRITGITG--DHDTSELENSMKGLSEEAISLGISLEFQFLAEQvS 350
                     ********************************************888879*******9..569**************************855445 PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       +l+ e+L+++++Eal Vn++++lh+ ++es  + +   +vL+ vk+l+P +++vveq+a+hn++ Fl rfle+l+yysa+fdsl+a+lpr+s+
  XP_011086339.1 351 PLTLTCEKLDLRQEEALFVNSIMHLHKHVKESRGSLK---TVLQSVKKLNPVLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLDASLPRNSQ 442
                     667799**********************987776666...9****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +rik+E++ ++ ei nvva eg++r+erhe++ +Wr+++++aGF+ v l+    kqak++++ +++dgy+v +e+g l lgWk+rp++ +SaW+
  XP_011086339.1 443 QRIKIEKFHFAGEIHNVVAYEGSDRVERHERADQWRRQIGRAGFQVVGLK--CLKQAKMMVSSYGVDGYSVGSEKGYLQLGWKGRPIMIASAWQ 534
                     ***********************************************995..79***************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.532137516IPR005202Transcription factor GRAS
PfamPF035142.7E-105163534IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MGGLMNGWLT LPTFEILNQD SAIRQFCPAR VEQGQGGEWG DSLSVDEDVE IWPHLIDETP  60
QLAPSEVEEI VRTFFDVECY EKDNAGKCLE EEGNDLFDKV QEDGLQDLSM VDDDLCCGLN  120
AAMLIEEGCD EMERCSSTNN LGSFVPNNAE DMIPVGVDQG LQLVHLLLAC AEAVGCRDTQ  180
LADSILTQIW PCVNTWGDSL QRVSHCFAMG LKSRLSLLQN VNSNGFFTSK AIDVSLITRE  240
EKIEAFTLLH QTTPYISFGL MAANDAISQA ATGKDFLHII DLGMEHNLQW PCLVRTLASR  300
TDGPPKTIRI TGITGDHDTS ELENSMKGLS EEAISLGISL EFQFLAEQVS PLTLTCEKLD  360
LRQEEALFVN SIMHLHKHVK ESRGSLKTVL QSVKKLNPVL LTVVEQDANH NGPFFLGRFL  420
ESLHYYSAIF DSLDASLPRN SQQRIKIEKF HFAGEIHNVV AYEGSDRVER HERADQWRRQ  480
IGRAGFQVVG LKCLKQAKMM VSSYGVDGYS VGSEKGYLQL GWKGRPIMIA SAWQVHNVPS  540
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5717053325377Protein SCARECROW
5b3h_D1e-5717053325377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086339.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086339.10.0DELLA protein RGL1-like
TrEMBLA0A2G9GIU10.0A0A2G9GIU1_9LAMI; Uncharacterized protein
STRINGXP_004306565.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140671113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-72RGA-like 2