PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086308.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 310aa    MW: 34239.6 Da    PI: 6.9614
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017108130123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C + Fs++  L  H++ H
  XP_011086308.1 108 FTCNFCRREFSTSQALGGHQNAH 130
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.66E-6105135No hitNo description
Gene3DG3DSA:3.30.160.602.7E-4106134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.51108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEILIDDYHH QPCHSEASNI SATSQESPPT KPNLDAKKKE KIEEGSASKH ETTSRLVLDL  60
KLASDDDHLT YNGNPSSKLE LNLFNSSGAA ASESSNDGFR KQSEPKVFTC NFCRREFSTS  120
QALGGHQNAH KQERALAKHR HGVVDMTGSA TGPPPFGHHS GYPYYPTYST FSQLPFYGTF  180
NRSLGIRAES MIHKPYTYHP PTWSSSSSSP YNSYRFGHEK VARTYMISPP SSTSYDRSRV  240
ENFHTHQISG SGLGPTLNLG LDPKPNPLSD AYCNPTTTKI DEGNNNQGLR LTSNLDDETD  300
PSGLDLNLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086308.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086308.10.0zinc finger protein 3-like
TrEMBLA0A2G9H9661e-114A0A2G9H966_9LAMI; Uncharacterized protein
STRINGMigut.B01175.1.p1e-59(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.19e-21C2H2 family protein