PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011086192.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | G2-like | ||||||||
Protein Properties | Length: 308aa MW: 34464.2 Da PI: 9.1704 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.8 | 1e-32 | 51 | 104 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt++LH++F++ave+LGG+++AtPk +lelm+vkgLt++hvkSHLQ+YR+ XP_011086192.1 51 PRLRWTHDLHQCFINAVERLGGEDRATPKMVLELMNVKGLTITHVKSHLQMYRS 104 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.164 | 47 | 107 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-31 | 47 | 106 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.34E-15 | 49 | 105 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.9E-26 | 51 | 105 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-8 | 52 | 103 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MDSPPALSTL NMIPAADRSL DGFFVSQPEI NRHPPPTKAA GVRPYVRSKM PRLRWTHDLH 60 QCFINAVERL GGEDRATPKM VLELMNVKGL TITHVKSHLQ MYRSMKHEQM LQEVEAAEAA 120 AGKNKKTEAI PQPNYFQISG SSQYSNSQNP DMLSITKDAP FQDQHCACFY STSHVSDNTR 180 PRPPIWQEVK LKAMETEANI VPPFYHPDNG QRFNYSIMLR DLFRGCKPPL TNTTSLATVG 240 LHAQVRTPDV INVRRSKEKQ VVLRDLNSGS KQSSFVSGCP RALRVEPRGL GPSESTDTND 300 VSLELTLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-18 | 52 | 107 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-18 | 52 | 107 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-18 | 52 | 107 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-18 | 52 | 107 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-18 | 52 | 107 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-18 | 52 | 107 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-18 | 52 | 107 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-18 | 52 | 107 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-18 | 52 | 107 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-18 | 52 | 107 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-18 | 52 | 107 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-18 | 52 | 107 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011086192.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086192.1 | 0.0 | uncharacterized protein LOC105167992 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7450 | 20 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 2e-30 | G2-like family protein |