PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011086080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 534aa MW: 58197.6 Da PI: 4.6415 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.5e-18 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l XP_011086080.1 39 KGPWTTAEDAILIDYVKKHGEGNWNAVQKHTGLSRCGKSCRLRWANHL 86 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T eE+ l++++++ +G++ W++ a++++ gRt++++k++w++ XP_011086080.1 92 KGAFTSEEERLIIELHANMGNK-WARMAAHLP-GRTDNEIKNYWNT 135 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.731 | 34 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.43E-30 | 38 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-16 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-16 | 39 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.81E-12 | 41 | 86 | No hit | No description |
PROSITE profile | PS51294 | 25.136 | 87 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 92 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 94 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.70E-11 | 94 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MGRCISNESE GGLLSTDSPL SNDGDNFGDS SNRGSILKKG PWTTAEDAIL IDYVKKHGEG 60 NWNAVQKHTG LSRCGKSCRL RWANHLRPDL KKGAFTSEEE RLIIELHANM GNKWARMAAH 120 LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP ELCLEGPLEN QQSLNSCAMY GGDTRSCDIL 180 QSNGYKTPDI MFDSLTYAPK LPDISDSGSL INCFGCPQYY SFVPQSIGLQ KCPQDPDEPM 240 SDYGGGTAAE TPSFDRAHSD NFENRMSQSF GFCIPYDPDH TELPLGINQD SHFTPNGFSS 300 ASKPIAGAEK SELPSLQYQV NGFDVWNPAH ESLEFIQSSI GWTPPSGCPS PSSCGLLEAL 360 LYEANALSQS WNQFSDKATS STISASDITD SSVLKTSSQE LKGYLDPLSS LGNSVGSIFN 420 ECSPAHAVVS SLEEKLPVRI LKSEPVDQSW VLDRERNGIL NDFDCIRPAA TLGSCWLEQS 480 ASFAKQQASA TDYILGDDLG SELNMSSGTS VSSLGLSSCT WNTMPAACQM SDHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-34 | 37 | 140 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00490 | DAP | Transfer from AT5G06100 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011086080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020551551.1 | 0.0 | transcription factor GAMYB isoform X1 | ||||
TrEMBL | A0A2G9G5B8 | 0.0 | A0A2G9G5B8_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N01870.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 3e-91 | myb domain protein 33 |