PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 534aa    MW: 58197.6 Da    PI: 4.6415
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086080.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-183986148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l
   XP_011086080.1 39 KGPWTTAEDAILIDYVKKHGEGNWNAVQKHTGLSRCGKSCRLRWANHL 86
                     79******************************************9986 PP

2Myb_DNA-binding49.21.2e-1592135146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T eE+ l++++++ +G++ W++ a++++ gRt++++k++w++
   XP_011086080.1  92 KGAFTSEEERLIIELHANMGNK-WARMAAHLP-GRTDNEIKNYWNT 135
                      799*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7313486IPR017930Myb domain
SuperFamilySSF466892.43E-3038133IPR009057Homeodomain-like
SMARTSM007175.8E-163888IPR001005SANT/Myb domain
PfamPF002491.8E-163986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-244093IPR009057Homeodomain-like
CDDcd001672.81E-124186No hitNo description
PROSITE profilePS5129425.13687141IPR017930Myb domain
SMARTSM007171.7E-1591139IPR001005SANT/Myb domain
PfamPF002491.8E-1492135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2594140IPR009057Homeodomain-like
CDDcd001674.70E-1194135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MGRCISNESE GGLLSTDSPL SNDGDNFGDS SNRGSILKKG PWTTAEDAIL IDYVKKHGEG  60
NWNAVQKHTG LSRCGKSCRL RWANHLRPDL KKGAFTSEEE RLIIELHANM GNKWARMAAH  120
LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP ELCLEGPLEN QQSLNSCAMY GGDTRSCDIL  180
QSNGYKTPDI MFDSLTYAPK LPDISDSGSL INCFGCPQYY SFVPQSIGLQ KCPQDPDEPM  240
SDYGGGTAAE TPSFDRAHSD NFENRMSQSF GFCIPYDPDH TELPLGINQD SHFTPNGFSS  300
ASKPIAGAEK SELPSLQYQV NGFDVWNPAH ESLEFIQSSI GWTPPSGCPS PSSCGLLEAL  360
LYEANALSQS WNQFSDKATS STISASDITD SSVLKTSSQE LKGYLDPLSS LGNSVGSIFN  420
ECSPAHAVVS SLEEKLPVRI LKSEPVDQSW VLDRERNGIL NDFDCIRPAA TLGSCWLEQS  480
ASFAKQQASA TDYILGDDLG SELNMSSGTS VSSLGLSSCT WNTMPAACQM SDHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-34371405107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551551.10.0transcription factor GAMYB isoform X1
TrEMBLA0A2G9G5B80.0A0A2G9G5B8_9LAMI; Uncharacterized protein
STRINGMigut.N01870.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.13e-91myb domain protein 33