PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011085990.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Trihelix

Protein Properties

Length: 309aa MW: 34987.3 Da PI: 5.1054

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011085990.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.8	4.5e-16	24	114	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++ + +L++a ++ +l+rg+l++++W+ev++++ + ++ +r+ +qCk++++ l+k+yk +k+ ++ + + +s++p+f++le XP_011085990.1 24 CWTEEATSTLVDAWGRRYLELNRGNLRQKDWQEVADAVnarhgHTKKTRRTDVQCKNRIDTLKKKYKIEKAKISESNGTLTSSWPFFSRLE 114 8***********************************99888888999*****************9999988888899***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.2E-26	22	114	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGDLTESSTP QPPPSRQVPF REDCWTEEAT STLVDAWGRR YLELNRGNLR QKDWQEVADA 60 VNARHGHTKK TRRTDVQCKN RIDTLKKKYK IEKAKISESN GTLTSSWPFF SRLELLIGSN 120 LNKNQSKLTP SAATPLASSQ STPPLYLPAP PMAVPLPYRK PLTSAMVTPV ILPQKRPLPS 180 PAMDESYFRR NYSAMAAAAA AAEDEVDADE DDGESEGEEA EGSDDRAVEE EEDGEEGMRR 240 LAKAIERFGE IYEKVESMKQ RQMVELEKQR MQFAKDLEVQ RMRLFMDTQV QLEKIKQAKR 300 SGSPDDIYS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011085990.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085990.1	0.0	trihelix transcription factor ASIL1-like
TrEMBL	A0A2G9GU26	1e-161	A0A2G9GU26_9LAMI; Transcription factor GT-2
STRING	Migut.M01037.1.p	1e-150	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	6e-54	sequence-specific DNA binding transcription factors