PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011085960.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NF-YC

Protein Properties

Length: 276aa MW: 30299.5 Da PI: 5.1666

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011085960.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.5	7.2e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v + ++fdfl ++v + XP_011085960.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITVQRGAKTVSSVHLKHCVHSYNVFDFLKEVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.8E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.29E-20	4	88	IPR009072	Histone-fold
Pfam	PF00808	1.5E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITVQRGAK 60 TVSSVHLKHC VHSYNVFDFL KEVVSKVPDY GHSETAADVK RRKVIANEPN DSDEESKRNI 120 MQETCHASGS GRGRGRGRGR GRGRASRATE REFPRHEVES GSTSIQQSVE QVPSPGKPMD 180 SSSELKESSK DNKVNDGVSS DSRNFDLNAG VDEENSEKMA SNAVAAAAST ASGPPEVKGD 240 EYPGLSEMDR MAIDPVHLAQ LSSRLDEDEE DYDEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-22	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	143	RGRGRGRGRGR
2	135	144	RGRGRGRGRA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011085960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020550081.1	0.0	dr1-associated corepressor
TrEMBL	A0A2G9H960	1e-130	A0A2G9H960_9LAMI; Class 2 transcription repressor NC2, alpha subunit (DRAP1)
STRING	Migut.N01867.1.p	1e-116	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7960	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-65	nuclear factor Y, subunit C11