PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085658.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family G2-like
Protein Properties Length: 301aa    MW: 33853.2 Da    PI: 7.3098
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085658.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.21.7e-32205260156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH+rFv+a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYR++
  XP_011085658.1 205 KQRRCWSPELHQRFVDALHHLGGPQTATPKQIRELMKVDGLTNDEVKSHLQKYRIH 260
                     79****************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.508202262IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-30202263IPR009057Homeodomain-like
SuperFamilySSF466894.93E-19203263IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-27205260IPR006447Myb domain, plants
PfamPF002492.0E-8207258IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGQSMNEVNL NVGWKTLSDI LKQEAETDDS CKKTSEEVDV HVQELEEELR KIDAFKRELP  60
YCILLLKDAI ERLKWRRREL ELLKRGSEGD GMAAQVSNDF TKNKNLMSSA QLWKHDSVFH  120
LTSRYEEGEG NGSENRCQGC NFKNRVGAFV PFKKPSGTTI KDEKGTAPVH GVSLSLAEVE  180
ATDWGLKGDG GSGRTQPQQQ EQQRKQRRCW SPELHQRFVD ALHHLGGPQT ATPKQIRELM  240
KVDGLTNDEV KSHLQKYRIH IRKLSTPPPE LPGDTSKPLP AHFGFPPGPF FDASLAATAD  300
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-14205262157Transcription factor LUX
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085658.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085658.10.0myb family transcription factor EFM
TrEMBLA0A022RHZ12e-71A0A022RHZ1_ERYGU; Uncharacterized protein
TrEMBLA0A1S4C3023e-71A0A1S4C302_TOBAC; uncharacterized protein LOC107814623
STRINGMigut.K00828.1.p4e-72(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84972229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-49G2-like family protein