PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085606.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LSD
Protein Properties Length: 403aa    MW: 43246.8 Da    PI: 8.4399
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085606.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.91.6e-13234258125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     C+gCrt+L YP GA++V+Ca+C+tV
  XP_011085606.1 234 CNGCRTILLYPSGATNVCCAICNTV 258
                     ************************9 PP
2zf-LSD139.41e-12273297125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     CggCrtlL+  rGA+sVRC++C+tV
  XP_011085606.1 273 CGGCRTLLMHARGATSVRCSCCHTV 297
                     ************************9 PP
3zf-LSD146.46.3e-15314338125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C+t+L+YP+GApsV+Ca+C+++
  XP_011085606.1 314 CGNCHTMLMYPAGAPSVKCAVCHFI 338
                     ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF033571.8E-3420187IPR005024Snf7 family
Gene3DG3DSA:3.90.10.101.3E-4230339No hitNo description
TIGRFAMsTIGR010531.2E-12231261IPR005735Zinc finger, LSD1-type
PfamPF069432.6E-11234258IPR005735Zinc finger, LSD1-type
SuperFamilySSF486951.35E-7247336IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.7E-15270300IPR005735Zinc finger, LSD1-type
PfamPF069433.2E-11273297IPR005735Zinc finger, LSD1-type
CDDcd081680.00162291336No hitNo description
TIGRFAMsTIGR010532.9E-12311341IPR005735Zinc finger, LSD1-type
PfamPF069432.2E-13314338IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007034Biological Processvacuolar transport
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MNLNIFKKKT SPKDALRTSK REMAVATRGI EREISSLQME ERKLVAEIKK TAKTGNEAAT  60
RILARQLVRL RQQITNLQGS RAQIRGVATH TQALYASTSI STGMKGATKA MTAMNKQMEP  120
AKQTKMIKEF QKQSAQMDMT IEMMSEAIDE TLDKDEAEEE TEELTNQVLD EIGVDIASQL  180
SSAPKGRIAS KKVENVAPSA TSTEVEDLEK RLASLRNLFL LSSFASDMQS QLVCNGCRTI  240
LLYPSGATNV CCAICNTVTA VPQAGMEMAQ LICGGCRTLL MHARGATSVR CSCCHTVNLV  300
PAAAPPNNVA HVNCGNCHTM LMYPAGAPSV KCAVCHFITT VNMGDTRIPI PAHRPGGNFT  360
SASTPSTSTA AAPAHNQTVV VQNPMTVDES GKLVSNVVVG VTT
Functional Description ? help Back to Top
Source Description
UniProtComponent of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085606.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022926396.10.0vacuolar protein sorting-associated protein 2 homolog 2-like
RefseqXP_023003953.10.0vacuolar protein sorting-associated protein 2 homolog 2-like
SwissprotQ0WTY41e-125VPS2B_ARATH; Vacuolar protein sorting-associated protein 2 homolog 2
TrEMBLA0A1R3HTZ60.0A0A1R3HTZ6_9ROSI; Snf7
STRINGXP_004134888.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.73e-57LSD family protein
Publications ? help Back to Top
  1. Tang D,Ade J,Frye CA,Innes RW
    Regulation of plant defense responses in Arabidopsis by EDR2, a PH and START domain-containing protein.
    Plant J., 2005. 44(2): p. 245-57
    [PMID:16212604]
  2. Winter V,Hauser MT
    Exploring the ESCRTing machinery in eukaryotes.
    Trends Plant Sci., 2006. 11(3): p. 115-23
    [PMID:16488176]
  3. Spitzer C, et al.
    The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis.
    Development, 2006. 133(23): p. 4679-89
    [PMID:17090720]
  4. Shahriari M, et al.
    The Arabidopsis ESCRT protein-protein interaction network.
    Plant Mol. Biol., 2011. 76(1-2): p. 85-96
    [PMID:21442383]
  5. Ibl V, et al.
    Interactome of the plant-specific ESCRT-III component AtVPS2.2 in Arabidopsis thaliana.
    J. Proteome Res., 2012. 11(1): p. 397-411
    [PMID:22010978]
  6. Yang H, et al.
    Overexpression of CHMP7 from rapeseed and Arabidopsis causes dwarfism and premature senescence in Arabidopsis.
    J. Plant Physiol., 2016. 204: p. 16-26
    [PMID:27497741]