PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011085594.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 236aa MW: 27534 Da PI: 7.8142 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.4e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ll+++v G g+W++++ g++R++k+c++rw +yl XP_011085594.1 16 KGPWTPQEDKLLIEYVGSNGEGRWSSVSISTGLNRSGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 2e-15 | 73 | 113 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T++E+ +++++++ lG++ W++Iar+++ gRt++++k++w+++ XP_011085594.1 73 TPQEEGIIIQLHAVLGNK-WSAIARYLP-GRTDNEIKNYWRTH 113 9*****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.574 | 11 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.66E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-14 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.41E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 19.366 | 68 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-13 | 68 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.15E-9 | 73 | 114 | No hit | No description |
Pfam | PF00249 | 1.4E-13 | 73 | 113 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MERWGAVCDE EKGWKKGPWT PQEDKLLIEY VGSNGEGRWS SVSISTGLNR SGKSCRLRWV 60 NYLRPGLKKS HLTPQEEGII IQLHAVLGNK WSAIARYLPG RTDNEIKNYW RTHFKKRKPN 120 CETKKEKRRI LRQKLVHREQ EQTNYSNNIH ESPQACDEIN IKKETDMGYP IVENNQFLPM 180 MYQDTEFWFD FITADSYFWD ELWGLDDVIV QNRGGTGGGC CEGDTIDYVQ RGGYMS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-27 | 3 | 117 | 16 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011085594.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085594.1 | 1e-178 | transcription factor WER-like | ||||
TrEMBL | A0A2G9GMX4 | 7e-80 | A0A2G9GMX4_9LAMI; Uncharacterized protein | ||||
STRING | Solyc02g089190.1.1 | 1e-73 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G30210.1 | 1e-61 | myb domain protein 121 |