PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085591.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28087 Da    PI: 8.8037
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085591.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF947e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs +gkl+eys+
  XP_011085591.1  9 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSAKGKLFEYST 59
                    79***********************************************96 PP
2K-box86.94.1e-29771743100
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +++ + +++ k+++l+ e+ kL +++e Lqr+ R++ GedL++Lsl+eLq+L+qqL+++lk+iR++Kn+l+ e+i+ lqkk + lqe+n+ L kk
  XP_011085591.1  77 EKNLTTNSQPKENNLCIEHPKLMARLEVLQRNMRNYEGEDLDPLSLRELQSLQQQLDSALKRIRTRKNQLMQESISVLQKKGRLLQEQNNLLAKK 171
                     5666678899999********************************************************************************** PP

           K-box  98 lee 100
                     ++e
  XP_011085591.1 172 VKE 174
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.366161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-33285IPR002100Transcription factor, MADS-box
CDDcd002658.03E-42276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-31323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-313859IPR002100Transcription factor, MADS-box
PfamPF014866.0E-2482172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.55288178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FSKRRSGLLK KANEISVLCD AEVALIVFSA KGKLFEYSTD  60
TSMERIIEKY ERHSYAEKNL TTNSQPKENN LCIEHPKLMA RLEVLQRNMR NYEGEDLDPL  120
SLRELQSLQQ QLDSALKRIR TRKNQLMQES ISVLQKKGRL LQEQNNLLAK KVKEKEKEEE  180
QEQEQEALLP PTSFTFSLPP QLLHGTSSLT ICGDQEPTTG AEEDGNRAPP RDSNAHIPPW  240
LLRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-22174173Myocyte-specific enhancer factor 2B
1tqe_Q8e-22174173Myocyte-specific enhancer factor 2B
1tqe_R8e-22174173Myocyte-specific enhancer factor 2B
1tqe_S8e-22174173Myocyte-specific enhancer factor 2B
6c9l_A8e-22174173Myocyte-specific enhancer factor 2B
6c9l_B8e-22174173Myocyte-specific enhancer factor 2B
6c9l_C8e-22174173Myocyte-specific enhancer factor 2B
6c9l_D8e-22174173Myocyte-specific enhancer factor 2B
6c9l_E8e-22174173Myocyte-specific enhancer factor 2B
6c9l_F8e-22174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085591.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4832393e-33KJ483239.1 Coffea arabica FUL (FUL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085591.11e-180truncated transcription factor CAULIFLOWER A-like
SwissprotQ424291e-90AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLQ941M91e-107Q941M9_ANTMA; MADS-box transcription factor DEFH28
STRINGEOY221351e-100(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.17e-70AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]