PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085582.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 277aa    MW: 31183.2 Da    PI: 4.5928
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH551.5e-173483255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+e E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L ++++YI+ Lq
  XP_011085582.1 34 RSKHSETEQRRRSKINERFQILRDLIPEN----DQKRDKASFLLEVIQYIQFLQ 83
                    899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.4E-2331103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.4983282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-1933106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-163487No hitNo description
PfamPF000104.2E-153483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-133888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVRTVSHVED EETHDSSSPI AESKRVDQKV NASRSKHSET EQRRRSKINE RFQILRDLIP  60
ENDQKRDKAS FLLEVIQYIQ FLQEKLQMYE GSCQGWSPEP AKFSPWRINS GPVESYGDQS  120
QLDRDLSGHE DNVVLNPTVL SNVQNSVESD LTGSTLYRST DNPPMTMKAL PLNMPPQAPV  180
FETNEEELKS ENGEASISNS YSQGLLNSLT NALQSSGVDL SQTSISVQLD IGKRTNGRNT  240
NTTFNFKDPD DASGLDYGAP LNDIENYEHP QKRFRAD
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085582.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085579.10.0transcription factor BIM2 isoform X1
SwissprotQ9CAA47e-56BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A2G9HJ801e-133A0A2G9HJ80_9LAMI; Uncharacterized protein
STRINGMigut.H00581.1.p1e-106(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-54BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]