PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011085491.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C3H

Protein Properties

Length: 343aa MW: 37171.4 Da PI: 9.0368

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011085491.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.3	4.6e-12	25	49	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ XP_011085491.1 25 QPDCGYYLKTGTCKYGSTCKYHHPK 49 789********************96 PP
2	zf-CCCH	33.8	5.6e-11	68	92	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 t+ C++++rtG CkyG CkF+H++ XP_011085491.1 68 TRSCPYYMRTGLCKYGYACKFHHPQ 92 899********************97 PP
3	zf-CCCH	35	2.4e-11	194	219	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ G CkyG Ck++H++ XP_011085491.1 194 DQPECRYFMIHGSCKYGLDCKYHHPK 219 689*********************96 PP
4	zf-CCCH	35.8	1.3e-11	239	264	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G CkyG++CkF H+ XP_011085491.1 239 PGQPICSYYSLYGLCKYGPTCKFDHP 264 5789*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.9E-5	22	49	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.68	22	50	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-9	25	49	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.88E-6	27	50	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-4	28	49	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-7	63	93	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.0E-5	65	92	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.249	65	93	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-8	67	92	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.5E-5	68	91	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.9E-5	192	219	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.497	192	220	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.9E-9	194	219	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.8E-6	195	222	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.0E-4	198	220	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-6	237	264	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8E-7	238	265	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.699	238	266	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-8	240	264	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.3E-4	243	263	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MVQCPIKLKV YGVKNTSELP ERAGQPDCGY YLKTGTCKYG STCKYHHPKD RQADVLMNLV 60 GLPMRQNTRS CPYYMRTGLC KYGYACKFHH PQPATTTNVL PVIGPVYGSG GSTGAPSPGA 120 PSIGDPSTTP LSKATYFSNS LLQLPQNYIP LFLSPSQGWN TYMGSVAPLS VTSVLTTPAS 180 NGQLSASYLP ERPDQPECRY FMIHGSCKYG LDCKYHHPKE KISQVASSSL GPLGLPLRPG 240 QPICSYYSLY GLCKYGPTCK FDHPLDGYSY AYSLAVPPLA AAYSSTTPYQ RATPLVPLSE 300 TSLAKPSRVS DCIKKGETTG NKNQQPKTKN VGDSPNPSDS LPH

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MVQCPIKLKV YGVKNTSELP ERAGQPDCGY YLKTGTCKYG STCKYHHPKD RQADVLMNLV  60
GLPMRQNTRS CPYYMRTGLC KYGYACKFHH PQPATTTNVL PVIGPVYGSG GSTGAPSPGA  120
PSIGDPSTTP LSKATYFSNS LLQLPQNYIP LFLSPSQGWN TYMGSVAPLS VTSVLTTPAS  180
NGQLSASYLP ERPDQPECRY FMIHGSCKYG LDCKYHHPKE KISQVASSSL GPLGLPLRPG  240
QPICSYYSLY GLCKYGPTCK FDHPLDGYSY AYSLAVPPLA AAYSSTTPYQ RATPLVPLSE  300
TSLAKPSRVS DCIKKGETTG NKNQQPKTKN VGDSPNPSDS LPH

Functional Description ? help Back to Top
Source	Description
UniProt	Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269\|PubMed:18582464}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011085491.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085488.1	0.0	zinc finger CCCH domain-containing protein 3 isoform X1
Refseq	XP_011085489.1	0.0	zinc finger CCCH domain-containing protein 33 isoform X2
Swissprot	Q94AD9	2e-71	C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A4D8XVR1	1e-154	A0A4D8XVR1_SALSN; Uncharacterized protein
STRING	Migut.H01247.1.p	1e-133	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	2e-65	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]