PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011085489.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 410aa MW: 44529.2 Da PI: 8.6485 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.5e-11 | 46 | 71 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG +C+F+H+ XP_011085489.1 46 PGEPDCIYYLRTGSCGYGTSCRFNHP 71 5789*********************8 PP | |||||||
2 | zf-CCCH | 37 | 5.7e-12 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ XP_011085489.1 92 QPDCGYYLKTGTCKYGSTCKYHHPK 116 789********************96 PP | |||||||
3 | zf-CCCH | 33.5 | 7e-11 | 135 | 159 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 t+ C++++rtG CkyG CkF+H++ XP_011085489.1 135 TRSCPYYMRTGLCKYGYACKFHHPQ 159 899********************97 PP | |||||||
4 | zf-CCCH | 34.7 | 3e-11 | 261 | 286 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ G CkyG Ck++H++ XP_011085489.1 261 DQPECRYFMIHGSCKYGLDCKYHHPK 286 689*********************96 PP | |||||||
5 | zf-CCCH | 35.5 | 1.6e-11 | 306 | 331 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G CkyG++CkF H+ XP_011085489.1 306 PGQPICSYYSLYGLCKYGPTCKFDHP 331 5789*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.5E-5 | 45 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.845 | 45 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-9 | 47 | 71 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 50 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 51 | 70 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.68 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-5 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 94 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 95 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-7 | 130 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.249 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-5 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-8 | 134 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-5 | 135 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.497 | 259 | 287 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-5 | 259 | 286 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-9 | 261 | 286 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-6 | 262 | 289 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-4 | 265 | 287 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 304 | 331 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.699 | 305 | 333 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-7 | 305 | 332 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-8 | 307 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-4 | 310 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MPGNRKLQRN GSVPDKVEEV MRRLKVEESD DNGRVGDDPG AYPDRPGEPD CIYYLRTGSC 60 GYGTSCRFNH PSNAGQVYGV KNTSELPERA GQPDCGYYLK TGTCKYGSTC KYHHPKDRQA 120 DVLMNLVGLP MRQNTRSCPY YMRTGLCKYG YACKFHHPQP ATTTNVLPVI GPVYGSGGST 180 GAPSPGAPSI GDPSTTPLSK ATYFSNSLLQ LPQNYIPLFL SPSQGWNTYM GSVAPLSVTS 240 VLTTPASNGQ LSASYLPERP DQPECRYFMI HGSCKYGLDC KYHHPKEKIS QVASSSLGPL 300 GLPLRPGQPI CSYYSLYGLC KYGPTCKFDH PLDGYSYAYS LAVPPLAAAY SSTTPYQRAT 360 PLVPLSETSL AKPSRVSDCI KKGETTGNKN QQPKTKNVGD SPNPSDSLPH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011085489.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085489.1 | 0.0 | zinc finger CCCH domain-containing protein 33 isoform X2 | ||||
TrEMBL | A0A4D8XVR1 | 0.0 | A0A4D8XVR1_SALSN; Uncharacterized protein | ||||
STRING | Migut.H01247.1.p | 1e-178 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 3e-87 | C3H family protein |