PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011085488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 414aa MW: 44956.7 Da PI: 8.6485 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.5e-11 | 46 | 71 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG +C+F+H+ XP_011085488.1 46 PGEPDCIYYLRTGSCGYGTSCRFNHP 71 5789*********************8 PP | |||||||
2 | zf-CCCH | 37 | 5.8e-12 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ XP_011085488.1 96 QPDCGYYLKTGTCKYGSTCKYHHPK 120 789********************96 PP | |||||||
3 | zf-CCCH | 33.5 | 7e-11 | 139 | 163 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 t+ C++++rtG CkyG CkF+H++ XP_011085488.1 139 TRSCPYYMRTGLCKYGYACKFHHPQ 163 899********************97 PP | |||||||
4 | zf-CCCH | 34.7 | 3e-11 | 265 | 290 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ G CkyG Ck++H++ XP_011085488.1 265 DQPECRYFMIHGSCKYGLDCKYHHPK 290 689*********************96 PP | |||||||
5 | zf-CCCH | 35.5 | 1.7e-11 | 310 | 335 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G CkyG++CkF H+ XP_011085488.1 310 PGQPICSYYSLYGLCKYGPTCKFDHP 335 5789*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.5E-5 | 45 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.845 | 45 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-9 | 47 | 71 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 50 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 51 | 70 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.68 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-5 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 98 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 99 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-7 | 134 | 164 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.249 | 136 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-5 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-8 | 138 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-5 | 139 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-5 | 263 | 290 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.497 | 263 | 291 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.8E-9 | 265 | 290 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-6 | 266 | 293 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 269 | 291 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 308 | 335 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-7 | 309 | 336 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.699 | 309 | 337 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-8 | 311 | 335 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-4 | 314 | 334 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MPGNRKLQRN GSVPDKVEEV MRRLKVEESD DNGRVGDDPG AYPDRPGEPD CIYYLRTGSC 60 GYGTSCRFNH PSNAGQVNTI VYGVKNTSEL PERAGQPDCG YYLKTGTCKY GSTCKYHHPK 120 DRQADVLMNL VGLPMRQNTR SCPYYMRTGL CKYGYACKFH HPQPATTTNV LPVIGPVYGS 180 GGSTGAPSPG APSIGDPSTT PLSKATYFSN SLLQLPQNYI PLFLSPSQGW NTYMGSVAPL 240 SVTSVLTTPA SNGQLSASYL PERPDQPECR YFMIHGSCKY GLDCKYHHPK EKISQVASSS 300 LGPLGLPLRP GQPICSYYSL YGLCKYGPTC KFDHPLDGYS YAYSLAVPPL AAAYSSTTPY 360 QRATPLVPLS ETSLAKPSRV SDCIKKGETT GNKNQQPKTK NVGDSPNPSD SLPH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011085488.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085488.1 | 0.0 | zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
TrEMBL | A0A4D8XVR1 | 0.0 | A0A4D8XVR1_SALSN; Uncharacterized protein | ||||
STRING | Migut.H01247.1.p | 1e-176 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13571 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 6e-87 | C3H family protein |