PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011085456.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 822aa MW: 94918.7 Da PI: 7.0972

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011085456.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.4	5.1e-28	65	152	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk+++dgkw+++++ +eHnHel p XP_011085456.1 65 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESESG---SSRRPSVKKTDCKASMHVKRKRDGKWYIHEFIKEHNHELLP 152 5*************************************9999877...77888899****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-25	65	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-24	273	365	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.866	552	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-6	553	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.3E-7	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 822 aa Download sequence Send to blast
MVDYEDNVEC GEEGIGLNMV DVVDAGENRD GQVSSSHKGD ILGIEGDNFE PHDGIEFESH 60 EAAYSFYQEY AKSMGFTTSI KNSRRSKKTK EFIDAKFACS RYGVTPESES GSSRRPSVKK 120 TDCKASMHVK RKRDGKWYIH EFIKEHNHEL LPALAYHFRI HRNVKLAEKN NIDILHAVSE 180 RTRKMYVEMS RQSGGSFNSC LSKNEFDHQF DRGRYLALEE GDAQVMLEYF VQIQKENPGF 240 FYAIDLNEDQ RLRNLFWVDA KTRKDYISFS DAVFFDTSYI KINEKMPIAL FLGVNHHFQP 300 MLLGCALLAD ETKPTFVWLM KTWLRAMGGQ APTVIITDPD KQLKSAIEEV FPYSRHCFAL 360 WHILERIHET LAHVLKQHEN FMKKFNKCIF KSLTDEEFDM RWWKMVGRFE LQENEWVHSM 420 YVDRKKWVPT FMRDIFLAGL STYQRSESVN SFFDKYIHKK INLKEFVRQY GAILQNRYEE 480 EDMADFDTLH KQPALRSPSP WEKQMSTILT HAIFRKFQVE VLGVVGCHPK KEKEMGANVI 540 FRVDDCEKTE NFVVTWNEAK SEVSCSCLMF EYKGFLCRHS MIVLQICGLP SIPSRYILKR 600 WTKDAKSRQA VVDGNERIQT RVQRYNDLCK RAIELGEEGS LSEENYNIAC RALVEALKNC 660 VNVNNRTAAE CSNNSVGLRC AEEENQLLHV TKTNKKKNTN KKRKLQPEPE AVVIEASDSL 720 QQMENLSSEG ITLNGYYGSQ QHVHGLLNLM EPPHDAYYVS QQTMQGLGQL NSIASSHDGF 780 YGAQQSMPGL GHLDFRQPAF TYGMADEHNV RPAQLHGTAR HA

Sequence ? help Back to Top

Protein Sequence Length: 822 aa Download sequence Send to blast

MVDYEDNVEC GEEGIGLNMV DVVDAGENRD GQVSSSHKGD ILGIEGDNFE PHDGIEFESH  60
EAAYSFYQEY AKSMGFTTSI KNSRRSKKTK EFIDAKFACS RYGVTPESES GSSRRPSVKK  120
TDCKASMHVK RKRDGKWYIH EFIKEHNHEL LPALAYHFRI HRNVKLAEKN NIDILHAVSE  180
RTRKMYVEMS RQSGGSFNSC LSKNEFDHQF DRGRYLALEE GDAQVMLEYF VQIQKENPGF  240
FYAIDLNEDQ RLRNLFWVDA KTRKDYISFS DAVFFDTSYI KINEKMPIAL FLGVNHHFQP  300
MLLGCALLAD ETKPTFVWLM KTWLRAMGGQ APTVIITDPD KQLKSAIEEV FPYSRHCFAL  360
WHILERIHET LAHVLKQHEN FMKKFNKCIF KSLTDEEFDM RWWKMVGRFE LQENEWVHSM  420
YVDRKKWVPT FMRDIFLAGL STYQRSESVN SFFDKYIHKK INLKEFVRQY GAILQNRYEE  480
EDMADFDTLH KQPALRSPSP WEKQMSTILT HAIFRKFQVE VLGVVGCHPK KEKEMGANVI  540
FRVDDCEKTE NFVVTWNEAK SEVSCSCLMF EYKGFLCRHS MIVLQICGLP SIPSRYILKR  600
WTKDAKSRQA VVDGNERIQT RVQRYNDLCK RAIELGEEGS LSEENYNIAC RALVEALKNC  660
VNVNNRTAAE CSNNSVGLRC AEEENQLLHV TKTNKKKNTN KKRKLQPEPE AVVIEASDSL  720
QQMENLSSEG ITLNGYYGSQ QHVHGLLNLM EPPHDAYYVS QQTMQGLGQL NSIASSHDGF  780
YGAQQSMPGL GHLDFRQPAF TYGMADEHNV RPAQLHGTAR HA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011085456.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085456.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Refseq	XP_011085457.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A022RW20	0.0	A0A022RW20_ERYGU; Uncharacterized protein
STRING	Migut.H01263.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]