PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085450.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 442aa    MW: 48309 Da    PI: 5.7844
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085450.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.29.3e-112824393374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lLl+cAe+v+ ++l  a +lL ++ el+sp g++ qR+ ayf+ AL++r+ +s  ++y+ l+p +++  +++++l+a+++++ v P++kfsh+t
  XP_011085450.1  82 GLLLQCAECVAIDNLDDAGRLLPEIAELSSPFGSSAQRVGAYFADALSSRIISSYLGTYSPLSPFSKT--HVQKRLSAVQIYNSVAPLIKFSHFT 174
                     58*********************************************************988777666..6************************ PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                     aNqaI +av+g+++vH+iD+di+qGlQWp L++ Las++++  s+RiTg+gs    s+e l++tg+rLa+fA++l +pf+f++l  k     +++
  XP_011085450.1 175 ANQAIQQAVDGADHVHVIDLDIMQGLQWPGLFHILASKTRKIKSFRITGLGS----SAELLSSTGQRLAEFASALSIPFQFHPLEGKIGYIKDIN 265
                     ****************************************************....9**************************8666666669** PP

            GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                     eL++k gE+++V++++  h l+d ++s        L+++  ++Pk++++v q+++h ++sFl rf+eal+yysalfd+l ++l++eseer++vE+
  XP_011085450.1 266 ELNIKLGEVVVVHWMH--HCLYDVTGSDLG----ALRILSLIRPKLITIVAQDLSH-GGSFLGRFVEALHYYSALFDALGEGLAAESEERHTVEQ 353
                     ***************9..888888888888....9*********************.789*********************************** PP

            GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +l+g ei+n+va  g +r+ + + +ekW + l ++GF+pv+l  + a+qa lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  XP_011085450.1 354 QLFGSEIRNIVAVGGPKRTGEVK-VEKWGDELFKVGFRPVSLAGNPAAQATLLLGMFPWQGYTLVEENGCLKLGWKDLSLLTASAWQ 439
                     *****************998887.9*************************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.62354419IPR005202Transcription factor GRAS
PfamPF035143.2E-10982439IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MIMLHSLLTP LHHHPANNSS MSAAGKRAVD LSSTSDEEPI KRRRSHLSLE EDLQAEEEEE  60
VEQLHPAACE DDGDSTGLRL LGLLLQCAEC VAIDNLDDAG RLLPEIAELS SPFGSSAQRV  120
GAYFADALSS RIISSYLGTY SPLSPFSKTH VQKRLSAVQI YNSVAPLIKF SHFTANQAIQ  180
QAVDGADHVH VIDLDIMQGL QWPGLFHILA SKTRKIKSFR ITGLGSSAEL LSSTGQRLAE  240
FASALSIPFQ FHPLEGKIGY IKDINELNIK LGEVVVVHWM HHCLYDVTGS DLGALRILSL  300
IRPKLITIVA QDLSHGGSFL GRFVEALHYY SALFDALGEG LAAESEERHT VEQQLFGSEI  360
RNIVAVGGPK RTGEVKVEKW GDELFKVGFR PVSLAGNPAA QATLLLGMFP WQGYTLVEEN  420
GCLKLGWKDL SLLTASAWQP SD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1597444013380Protein SCARECROW
5b3h_A1e-1597444012379Protein SCARECROW
5b3h_D1e-1597444012379Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14045KRRRSH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085450.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-173SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2Z7A7200.0A0A2Z7A720_9LAMI; Uncharacterized protein
STRINGXP_006481359.10.0(Citrus sinensis)
STRINGEOX931730.0(Theobroma cacao)
STRINGXP_006429765.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-163GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]