PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085439.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 929aa    MW: 103160 Da    PI: 6.2718
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.66.7e-25134235199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_011085439.1 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQTPPA--QELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNE 224
                     99****************************97544444..48************************************************..788 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_011085439.1 225 NNQLLLGIRRA 235
                     8889****997 PP
2Auxin_resp118.17.4e-39260343183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fet++ss rr++Gt++g+sdld vrWpnS+Wrs+k
  XP_011085439.1 260 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRVSVGMRFRMLFETDESSVRRYMGTITGISDLDAVRWPNSHWRSVK 343
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-48120263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-43126249IPR015300DNA-binding pseudobarrel domain
CDDcd100176.49E-22133234No hitNo description
PROSITE profilePS5086313.239134236IPR003340B3 DNA binding domain
SMARTSM010195.3E-26134236IPR003340B3 DNA binding domain
PfamPF023624.4E-23134235IPR003340B3 DNA binding domain
PfamPF065074.9E-34260343IPR010525Auxin response factor
SuperFamilySSF542778.5E-8787870No hitNo description
PROSITE profilePS5174524.082795879IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MRLSSSSSST TTGFNAQPEE GETKCLNSEL WHACAGPLVS LPQIGSRVVY FPQGHSEQVA  60
ASTNKEVDST IPNYPGLQPQ LICQLHNVTM HADVETDEVY AQMTLQPLSP QEQKDLCLLP  120
AELGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDYSQTPP AQELMAKDLH  180
GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVIF IWNENNQLLL GIRRANRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAAATNSRF TIFYNPRASP SEFVIPLAKY AKAVYHTRVS  300
VGMRFRMLFE TDESSVRRYM GTITGISDLD AVRWPNSHWR SVKVGWDEST AGERQPRVSL  360
WEIEPLTTFP MYPSPFSLRL KRPWPSALPS FPGLRDGDMS VNSPLAWLRG GIGDQGVQSL  420
NFQRFGVSPW MQPRLDTSML GLQPDIYHVM AAAALQETGS LDPSKLSHQP LLQFQQNVPN  480
LSASLIQNQN QMLQTPHNQQ NFLQNFPENS VISQAQILQQ QLQLRQQLND QQQQQQQQLH  540
EQRQQQQQQL HEQRQQQQVE QQVQQSQQLH PHFQDQQTNK TIPTVSQIGP ASVSQFTPLQ  600
GFSSTSQLLN FSDLIGNHMT SANNSSMSSV LSSFSHEGTT NLVNLHGPNP IVSHSSSSKR  660
VALDPQLPSK VSQFGVPHQE ELVIPSSKVT DLPALLPPFP GRDFPDFQGV TDSHNNLLYG  720
VNNDSSAIMP SGMSTLRNSG NENGSLSMPF ATPAFASAGR TDFPLNSDMT TSSCVDESGY  780
LQSSENVDQT NPPPGTFVKV HKSGSFGRSL DISKFSSYNE LRSELAHMFG LEGLLEDPQR  840
SGWQLVFVDR ENDVLLLGDD PWQEFVNSVW YIKILSPLEV QQMGKEGLDP NSVQSHYLSS  900
NGNSCDEFMS RNDPRTSLNG IPSVGTLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1582636451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085439.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085439.10.0auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2G9HS700.0A0A2G9HS70_9LAMI; Auxin response factor
STRINGXP_009757615.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]