PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085379.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HB-other
Protein Properties Length: 1797aa    MW: 201947 Da    PI: 5.4358
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-183892357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                    kR+  t++qle+Le+ ++++ yps++ r+eL+ klgLt+rq ++WF+ rR k++k
  XP_011085379.1 38 KRRMKTPSQLEILEKTYASETYPSEALRAELSVKLGLTDRQLQMWFCHRRLKDRK 92
                    899**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-172492IPR009057Homeodomain-like
SuperFamilySSF466896.42E-162592IPR009057Homeodomain-like
PROSITE profilePS5007116.4873393IPR001356Homeobox domain
SMARTSM003897.7E-173597IPR001356Homeobox domain
CDDcd000861.07E-133693No hitNo description
PfamPF000462.7E-163892IPR001356Homeobox domain
SMARTSM005711.9E-20564623IPR018501DDT domain
PROSITE profilePS5082716.135564623IPR018501DDT domain
PfamPF027913.6E-16565620IPR018501DDT domain
PfamPF050667.2E-15746814IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156120.00119701006IPR028942WHIM1 domain
PfamPF156134.6E-1211511223IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1797 aa     Download sequence    Send to blast
MEVDGGGDGG GGGGGEGGGG LSMEMEKKNM PEGESKVKRR MKTPSQLEIL EKTYASETYP  60
SEALRAELSV KLGLTDRQLQ MWFCHRRLKD RKPPTEKRQK KSFSPSAAAG PSGGSADEMI  120
LDDADMAKEP GSGLSLFGNM DLLQQQQRVV HKVGSAVPRI SSELPSMRRF YEPPLAISEQ  180
RAIAFVEAQL GEPLREDGPI LGMEFDPLPP GAFGAPIGQQ KPSGQPYDVK LYESPESKQI  240
KGASRALLEY QFLPEKPSAR NDAHERAGPP HYYGPPTDNQ NARVPLPMGR SLMRSNEQVS  300
SGYSLQSQMP SLLSQQGRQG HHLSPASGEV GIASRVPPLL NVNTDAHYLV QPLNGLSNHI  360
ITPERRIIYD EERLERKRKS EEARIAKEVE AHEKRIKKEL EKQDILRRKK EEQMRKEMER  420
QDRERRKEEE RLLREKQREE ERYQREQRRE MERREKFLQK EYIRAEKMRL KEEMRREKEA  480
AKLKAANDRA AARRIAKEST EMIEDERLEL MELAALSRGL SSILALDAET LQNLDMFKDK  540
LPEFPPKSAN LKRPFRLQPW TDSEENVGCL LMVWRFLINF ADVLGLWPFT LDEFTQAFHD  600
CDPRLLGEIH IALLRSIIKD IEDVARTATT APVANQNPAV MPGGGHPEIV EGAYAWGFDL  660
LSWQRHLTPL TWPEVLRQFA LSAGFGPKLK KRSMELPHFH DEHEGNDGEN VVSNLRSGVA  720
AENAVAIMQE RGFSNPRRSR HRLTPGTVKF AAFHVLSLEG SKGLSILDVA DKIQKSGLRD  780
LTTSKTPEAS ISAALSRDTK LFERTAPSTY CVRSPYRKNS ADAETILSAA REKIRLYQNG  840
NVDGEAEDVE KEDAERDQDS ESDAADDPDV DDLDAVSKLK EASHSSERSR LQDVNCSTYG  900
KETSCSEFME TPIHAHGTSR SSSSLRQSVD ERKSNGTSGD PCADVTGIHS QVAVPDQEDT  960
VIDDCGYAEP WVQGLTEGEY ADLSIEEPLS ALVALIGVAN EGNTIRIALE ERLEAANALK  1020
KQMWSEAQLD KRRMKEENTV KLHNSSLAGN KADQNIPYGP VEDRRNPLLT GDIKDVLSSS  1080
NHAVQLVDLN EQQNEQSYCS DIVSEKNPLM HEFSVGSDNL LLQQSVCAAE KSRSELKALI  1140
GYQAEQLYVY RSLPLGQDRR RNRYWQFITS PSQNDPGSGR IFVELCNGAW RLIDSEEGFD  1200
ALVSSLDIRG IRESHLHSML RKIETSFKGT ARKNLLCTIH PGNAFNEVKM EVLEMRPKSD  1260
SYSSNNDSRK SILCASYSKS PEPSVQFSNE LEKNVTEENE LMDRCKDVEK WMWEECFNSN  1320
KLGALNCGRL RSQLLLQICN CCHDLFSCDH NHCPSCHRTY SIFDQSFNFP EHVSQCKGKV  1380
SEELDGFTLK FSLPPRVRLL KAQLATIEAS IPSEALESVW SEQYRKSWGM KLHMASTAEE  1440
LLQNLTLLEN SIKKDFLSAN YETTCEILSS RKIVADCFSG PEEISVLPWI PQTTSAVALQ  1500
LMELDSSIYY TVHEKESCQK DNQAGYFAKA PLRYYTVDSS INNVSQAGYL RQDNWVDLVS  1560
GRTNLRRGRG RPRGPSRTCG GKSLRKAINS QDEMRRGSTE KYKFGEFPGW KGRPRGRGGR  1620
KKGRRSIRRK QKPDKGSGKN VVEKSGMKKS NFGDTPGRQQ EEWNLEEIPM EVPGAENVSS  1680
SGRSEFEDDN SPASADEYDD ISVDDIAGVR DGKSRYFATV DDYKVGGEDD GHDDGDDVDE  1740
NDEYEGDDGD NQQRDFYVDG YFNSDFHEEG NQPTGVEHAR DVLDRGSASS SASDYSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
116101621KGRPRGRGGRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085379.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085379.10.0homeobox-DDT domain protein RLT2-like
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A142CD130.0A0A142CD13_9LAMI; Chromatin assembly factor 1 subunit
STRINGXP_002517852.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21422352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.20.0Homeodomain-like transcriptional regulator