PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085308.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28145.7 Da    PI: 9.6733
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_011085308.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
                    79***********************************************8 PP
2K-box1111.2e-36961906100
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + s++ea+++++qqe++kL+++i+nLq++++++lGe+L+ L+l+eL++Le+++e++++kiRskKnell+++ie++qk+e +l+++n+ Lr+k++e
  XP_011085308.1  96 SGSVSEANTQYYQQEASKLRAQISNLQNQNKNMLGESLGALTLRELKNLETRVERGISKIRSKKNELLYAEIEYMQKREIDLHHNNHFLRAKIAE 190
                     33499***************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-411776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.3751777IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-331891IPR002100Transcription factor, MADS-box
CDDcd002652.90E-441893No hitNo description
PRINTSPR004044.4E-331939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003199.1E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-335475IPR002100Transcription factor, MADS-box
PfamPF014862.6E-25102188IPR002487Transcription factor, K-box
PROSITE profilePS5129714.525104194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEFPSDQTRE MSSERKTGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSSVK ATIERYKKAT SDSPNSGSVS EANTQYYQQE ASKLRAQISN  120
LQNQNKNMLG ESLGALTLRE LKNLETRVER GISKIRSKKN ELLYAEIEYM QKREIDLHHN  180
NHFLRAKIAE TERGQQHMSL MPGNSEYHEL VQSQPFDSRD YLQVSGLQTH NGYPRQDQPP  240
LQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A8e-201884167MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B8e-201884167MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C8e-201884167MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D8e-201884167MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P9e-201876260Myocyte-specific enhancer factor 2B
1tqe_Q9e-201876260Myocyte-specific enhancer factor 2B
1tqe_R9e-201876260Myocyte-specific enhancer factor 2B
1tqe_S9e-201876260Myocyte-specific enhancer factor 2B
6c9l_A9e-201876260Myocyte-specific enhancer factor 2B
6c9l_B9e-201876260Myocyte-specific enhancer factor 2B
6c9l_C9e-201876260Myocyte-specific enhancer factor 2B
6c9l_D9e-201876260Myocyte-specific enhancer factor 2B
6c9l_E9e-201876260Myocyte-specific enhancer factor 2B
6c9l_F9e-201876260Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085308.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085308.10.0floral homeotic protein AGAMOUS-like isoform X3
SwissprotQ408851e-142AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A0R6FU881e-149A0A0R6FU88_CATSE; AGAMOUS-like protein
STRINGMigut.M00986.1.p1e-140(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-117MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]