PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011085306.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 28273.8 Da PI: 9.6733 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.3 | 1.5e-31 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ XP_011085306.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74 79***********************************************8 PP | |||||||
2 | K-box | 103.8 | 2.2e-34 | 96 | 191 | 6 | 100 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqeenkaLrkkle 99 + s++ea+++++qqe++kL+++i+nLq++++++lGe+L+ L+l+eL++Le+++e++++kiRskKnell+++ie++qk+ e +l+++n+ Lr+k++ XP_011085306.1 96 SGSVSEANTQYYQQEASKLRAQISNLQNQNKNMLGESLGALTLRELKNLETRVERGISKIRSKKNELLYAEIEYMQKRqEIDLHHNNHFLRAKIA 190 33499**********************************************************************9984679***********98 PP K-box 100 e 100 e XP_011085306.1 191 E 191 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-41 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.375 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.11E-33 | 18 | 91 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.83E-44 | 18 | 93 | No hit | No description |
PRINTS | PR00404 | 4.5E-33 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.1E-27 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-33 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-33 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-23 | 102 | 189 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.496 | 104 | 195 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MEFPSDQTRE MSSERKTGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSSRGRL YEYANNSSVK ATIERYKKAT SDSPNSGSVS EANTQYYQQE ASKLRAQISN 120 LQNQNKNMLG ESLGALTLRE LKNLETRVER GISKIRSKKN ELLYAEIEYM QKRQEIDLHH 180 NNHFLRAKIA ETERGQQHMS LMPGNSEYHE LVQSQPFDSR DYLQVSGLQT HNGYPRQDQP 240 PLQLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 9e-20 | 18 | 84 | 1 | 67 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 9e-20 | 18 | 84 | 1 | 67 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 9e-20 | 18 | 84 | 1 | 67 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 9e-20 | 18 | 84 | 1 | 67 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1tqe_P | 9e-20 | 18 | 76 | 2 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 9e-20 | 18 | 76 | 2 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 9e-20 | 18 | 76 | 2 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 9e-20 | 18 | 76 | 2 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_A | 9e-20 | 18 | 76 | 2 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 9e-20 | 18 | 76 | 2 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 9e-20 | 18 | 76 | 2 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 9e-20 | 18 | 76 | 2 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 9e-20 | 18 | 76 | 2 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 9e-20 | 18 | 76 | 2 | 60 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011085306.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085305.1 | 0.0 | floral homeotic protein AGAMOUS-like isoform X1 | ||||
Refseq | XP_011085306.1 | 0.0 | floral homeotic protein AGAMOUS-like isoform X1 | ||||
Refseq | XP_020551391.1 | 0.0 | floral homeotic protein AGAMOUS-like isoform X1 | ||||
Swissprot | Q40885 | 1e-141 | AG_PETHY; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A0R6FU88 | 1e-152 | A0A0R6FU88_CATSE; AGAMOUS-like protein | ||||
STRING | Migut.M00986.1.p | 1e-142 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-115 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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