PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011085124.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

G2-like

Protein Properties

Length: 316aa MW: 36139.7 Da PI: 8.7621

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011085124.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101	8e-32	47	100	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +F++ave+LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+ XP_011085124.1 47 PRLRWTPDLHLCFLHAVERLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRS 100 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-30	42	101	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.087	43	103	IPR017930	Myb domain
SuperFamily	SSF46689	3.23E-15	44	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-23	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-9	48	99	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MTAPPAADHH QSEENESKPN STVDVEESGK KVVSSGSVRH YTRSKTPRLR WTPDLHLCFL 60 HAVERLGGQE RATPKLVLQL MNVKGLSIAH VKSHLQMYRS KKIDDPNHQV ISEQELLLDA 120 GDRHIYKLGQ LPLLQGYNQA PISSFRYRDV LWGSKPNSIY GPYRRWAATD VYINIRQSCP 180 RILENDHKHL QKFAEQSFWQ TQNKSSPTNP IKCPDHRDNR AHSMYVQNHH FSRLWAQEGS 240 GNCNLKRKFS CDQMNLDLDL SLETAPKNEK KMNKRSLKDD DDGVDSMLSL SLFSTSSEEI 300 HDCKNAKISA TLDLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-18	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-18	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-18	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-18	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-18	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-18	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-18	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-18	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011085124.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085124.2	0.0	uncharacterized protein LOC105167199
TrEMBL	A0A2Z7A5C4	8e-86	A0A2Z7A5C4_9LAMI; Uncharacterized protein
STRING	XP_009791663.1	8e-70	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8573	21	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-47	G2-like family protein