PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011085123.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 172aa MW: 18979.6 Da PI: 8.0024

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011085123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.4	5e-43	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+CakdCv+ap+fp+++p+kfa+vhk+FGasn++k+l++lp +r da+sslvyeA ar+rdPvyG++g i+ lq+q++ql+ +la XP_011085123.1 11 PCASCKLLRRRCAKDCVFAPHFPSDHPHKFAIVHKVFGASNISKMLQELPLPQRADAVSSLVYEATARVRDPVYGCTGAISYLQSQVAQLQMQLA 105 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e XP_011085123.1 106 LAQAE 110 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.096	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-42	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MGGSGTAGNS PCASCKLLRR RCAKDCVFAP HFPSDHPHKF AIVHKVFGAS NISKMLQELP 60 LPQRADAVSS LVYEATARVR DPVYGCTGAI SYLQSQVAQL QMQLALAQAE ILCNQIRQDQ 120 QLLPNTLQYL NETATQNNHM PQFHNFTSFD NKNVICSDSF KKDSVYGCDL VS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-44	7	124	7	127	LOB family transfactor Ramosa2.1
5ly0_B	4e-44	7	124	7	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011085123.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085123.1	1e-127	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	5e-65	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2N9GRE8	2e-77	A0A2N9GRE8_FAGSY; Uncharacterized protein
STRING	cassava4.1_033834m	3e-73	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-55	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]