PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011084945.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 28876.7 Da PI: 9.2902 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.3 | 2.1e-09 | 24 | 69 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+eE +++ a + + + +W ++a++++ g++ +++++ + XP_011084945.1 24 KWTKEENKKFESALAIFDEKtpnRWFKVAAMIP-GKSVYDVINQYKE 69 8******************9*************.*********9975 PP | |||||||
2 | Myb_DNA-binding | 44.6 | 3.2e-14 | 121 | 165 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + +++G+g+W++I+r++ +t+ q+ s+ qky XP_011084945.1 121 PWTEDEHRRFLLGLQKYGKGDWRSISRHFVVSKTPTQVASHAQKY 165 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.927 | 20 | 74 | IPR017884 | SANT domain |
SMART | SM00717 | 1.8E-10 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.22E-12 | 23 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.40E-8 | 24 | 71 | No hit | No description |
Pfam | PF00249 | 1.3E-7 | 24 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-4 | 24 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.974 | 114 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-16 | 115 | 169 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.9E-19 | 117 | 169 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.7E-11 | 118 | 168 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-11 | 118 | 165 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-11 | 121 | 165 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.32E-9 | 121 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEALCPTSLV QDSSWFIGQG KSTKWTKEEN KKFESALAIF DEKTPNRWFK VAAMIPGKSV 60 YDVINQYKEL VADVSDIEAG LVPVPGYMAS PFTLELSDYR SFDVCRKKGR TCDQERKKGV 120 PWTEDEHRRF LLGLQKYGKG DWRSISRHFV VSKTPTQVAS HAQKYYLRQL SGGKDKKRPS 180 IHDITTVDLV SPSDNNRPRP LEKTNELSFQ QKLNEALTVF DSSCGDSYAA YPFNVSTQSH 240 PSSCLHIQVP RFRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 9e-14 | 19 | 100 | 5 | 86 | RADIALIS |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 117 | RKKGRTCDQERKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011084945.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084945.1 | 0.0 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-86 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2G9FZV3 | 1e-114 | A0A2G9FZV3_9LAMI; Uncharacterized protein | ||||
STRING | XP_009776702.1 | 1e-106 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 8e-86 | MYB family protein |
Publications ? help Back to Top | |||
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