PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011084871.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GRAS | ||||||||
Protein Properties | Length: 505aa MW: 55670.8 Da PI: 6.3262 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 381.2 | 1.2e-116 | 134 | 504 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilk 92 lv++L++cAeav+ +d++ a++lLa+l+ +a g+++qR+a++f+++La rla + +++ ++p+ + ++ s+++ al+l +e++P ++ XP_011084871.1 134 LVQQLISCAEAVACRDKSHASHLLAELRANALVFGSSFQRVASCFVQGLADRLALvQPLGTVGYIAPKMNI-MDiaSEKKEEALRLVYEICPHIQ 227 689**************************************************983333444444444333.334588899999*********** PP GRAS 93 fshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 f+h++aN+ Ilea+ege+ vH++D++++ +G QW +L+++La+Rp+++p+lRiT++g ++ + +g+ L+ A elg+++ef+v v+ XP_011084871.1 228 FGHFVANSSILEAFEGESLVHVVDLGMTlglpHGQQWHSLIRSLAKRPGPSPRLRITAIGL----CVDKFRVIGDELETSAIELGLNLEFSV-VE 317 ************************98873333778**************************....**************************9.7* PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 ++ledl++e+++v pgE+l+Vn++lqlh +++es + +vL+++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ XP_011084871.1 318 SNLEDLKPEDIKVVPGEVLVVNSILQLHCVVKESRGALN---SVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKY 409 *******************************88877777...8**************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 + +r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+pvpl+ + +qak l+ ++ +gy++ ee+g+lvlgWk++p+v++S+ XP_011084871.1 410 DTKRAKMEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQPVPLK--MLAQAKQWLSSINaCEGYTIVEEKGCLVLGWKSKPIVAASC 502 ***************************************************7..6789*********9*************************** PP GRAS 373 Wr 374 W+ XP_011084871.1 503 WK 504 *8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.16 | 108 | 485 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-114 | 134 | 504 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MAYSFLPQDS YNDGRNFPVP FSGLPVFEDA ARAIWFPSLY NESGDFKRLK RTVSLGEVTD 60 SNSGSISSNG SISRTSSTSS LSSVPRLQFR DHIWTYTQRY LVAEAVEEAA AAIVCAEEGG 120 GVAGDAGSGD GMKLVQQLIS CAEAVACRDK SHASHLLAEL RANALVFGSS FQRVASCFVQ 180 GLADRLALVQ PLGTVGYIAP KMNIMDIASE KKEEALRLVY EICPHIQFGH FVANSSILEA 240 FEGESLVHVV DLGMTLGLPH GQQWHSLIRS LAKRPGPSPR LRITAIGLCV DKFRVIGDEL 300 ETSAIELGLN LEFSVVESNL EDLKPEDIKV VPGEVLVVNS ILQLHCVVKE SRGALNSVLQ 360 IIHELSPKVL VLVEQDSSHN GPFFLGRFME ALHYYSAIFD SLDAMLPKYD TKRAKMEQFY 420 FAEEIKNIVS CEGPARVERH ERVDQWRRRM SRAGFQPVPL KMLAQAKQWL SSINACEGYT 480 IVEEKGCLVL GWKSKPIVAA SCWKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 9e-62 | 141 | 503 | 26 | 378 | Protein SCARECROW |
5b3h_A | 8e-62 | 141 | 503 | 25 | 377 | Protein SCARECROW |
5b3h_D | 8e-62 | 141 | 503 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011084871.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084871.1 | 0.0 | DELLA protein RGL1-like | ||||
TrEMBL | A0A2G9FYC4 | 0.0 | A0A2G9FYC4_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D01232.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8167 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 1e-83 | RGA-like 1 |