PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084871.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 505aa    MW: 55670.8 Da    PI: 6.3262
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.21.2e-1161345041374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilk 92 
                     lv++L++cAeav+ +d++ a++lLa+l+ +a   g+++qR+a++f+++La rla  +  +++  ++p+ +  ++  s+++  al+l +e++P ++
  XP_011084871.1 134 LVQQLISCAEAVACRDKSHASHLLAELRANALVFGSSFQRVASCFVQGLADRLALvQPLGTVGYIAPKMNI-MDiaSEKKEEALRLVYEICPHIQ 227
                     689**************************************************983333444444444333.334588899999*********** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                     f+h++aN+ Ilea+ege+ vH++D++++    +G QW +L+++La+Rp+++p+lRiT++g       ++ + +g+ L+  A elg+++ef+v v+
  XP_011084871.1 228 FGHFVANSSILEAFEGESLVHVVDLGMTlglpHGQQWHSLIRSLAKRPGPSPRLRITAIGL----CVDKFRVIGDELETSAIELGLNLEFSV-VE 317
                     ************************98873333778**************************....**************************9.7* PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                     ++ledl++e+++v pgE+l+Vn++lqlh +++es    +   +vL+++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ 
  XP_011084871.1 318 SNLEDLKPEDIKVVPGEVLVVNSILQLHCVVKESRGALN---SVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKY 409
                     *******************************88877777...8**************************************************** PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                     + +r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+pvpl+  + +qak  l+ ++  +gy++ ee+g+lvlgWk++p+v++S+
  XP_011084871.1 410 DTKRAKMEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQPVPLK--MLAQAKQWLSSINaCEGYTIVEEKGCLVLGWKSKPIVAASC 502
                     ***************************************************7..6789*********9*************************** PP

            GRAS 373 Wr 374
                     W+
  XP_011084871.1 503 WK 504
                     *8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.16108485IPR005202Transcription factor GRAS
PfamPF035144.2E-114134504IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MAYSFLPQDS YNDGRNFPVP FSGLPVFEDA ARAIWFPSLY NESGDFKRLK RTVSLGEVTD  60
SNSGSISSNG SISRTSSTSS LSSVPRLQFR DHIWTYTQRY LVAEAVEEAA AAIVCAEEGG  120
GVAGDAGSGD GMKLVQQLIS CAEAVACRDK SHASHLLAEL RANALVFGSS FQRVASCFVQ  180
GLADRLALVQ PLGTVGYIAP KMNIMDIASE KKEEALRLVY EICPHIQFGH FVANSSILEA  240
FEGESLVHVV DLGMTLGLPH GQQWHSLIRS LAKRPGPSPR LRITAIGLCV DKFRVIGDEL  300
ETSAIELGLN LEFSVVESNL EDLKPEDIKV VPGEVLVVNS ILQLHCVVKE SRGALNSVLQ  360
IIHELSPKVL VLVEQDSSHN GPFFLGRFME ALHYYSAIFD SLDAMLPKYD TKRAKMEQFY  420
FAEEIKNIVS CEGPARVERH ERVDQWRRRM SRAGFQPVPL KMLAQAKQWL SSINACEGYT  480
IVEEKGCLVL GWKSKPIVAA SCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6214150326378Protein SCARECROW
5b3h_A8e-6214150325377Protein SCARECROW
5b3h_D8e-6214150325377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084871.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084871.10.0DELLA protein RGL1-like
TrEMBLA0A2G9FYC40.0A0A2G9FYC4_9LAMI; Uncharacterized protein
STRINGMigut.D01232.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-83RGA-like 1