PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011084822.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bZIP

Protein Properties

Length: 351aa MW: 38198.2 Da PI: 6.0919

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011084822.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.3	9.3e-10	152	200	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + XP_011084822.1 152 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQ 200 9****************************************99887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-15	148	212	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.714	150	213	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.4E-10	152	206	No hit	No description
Pfam	PF00170	1.7E-8	152	200	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.85E-11	152	203	No hit	No description
CDD	cd14703	5.36E-23	153	202	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MQDPNSKNLL SQPPPFSAAM RPSHHRRAHS EVNFRLPEDL DLVSDPFDAP AGSFEEMGSE 60 DDLFSTYMDI EKISGGAGGG SGVGDSILDN AGGGAGADDG NKNGGADGVA RPRHRHSNSV 120 DSSSLLFNES SIEAKKAMAP DKLAELWNID PKRAKRILAN RQSAARSKER KARYISELER 180 KVQTLQTEAT TLSAQLTLFQ RDTTGLSNEN TELKLRLQAM EQQAQLRDAL NEALKQEVER 240 LRLATGEISS TSDTFNLAMQ HVPYNQSTFF TSPPQSSPNE NIQMQQFHAV PTGMSSHQHP 300 MLSAAHVRGL ADSFHQDPLG RFQGLDIGSR SSHLVKTEGP SISASESSST F

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MQDPNSKNLL SQPPPFSAAM RPSHHRRAHS EVNFRLPEDL DLVSDPFDAP AGSFEEMGSE  60
DDLFSTYMDI EKISGGAGGG SGVGDSILDN AGGGAGADDG NKNGGADGVA RPRHRHSNSV  120
DSSSLLFNES SIEAKKAMAP DKLAELWNID PKRAKRILAN RQSAARSKER KARYISELER  180
KVQTLQTEAT TLSAQLTLFQ RDTTGLSNEN TELKLRLQAM EQQAQLRDAL NEALKQEVER  240
LRLATGEISS TSDTFNLAMQ HVPYNQSTFF TSPPQSSPNE NIQMQQFHAV PTGMSSHQHP  300
MLSAAHVRGL ADSFHQDPLG RFQGLDIGSR SSHLVKTEGP SISASESSST F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011084822.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084822.1	0.0	transcription factor RF2b
Swissprot	O22873	1e-111	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2G9GG82	0.0	A0A2G9GG82_9LAMI; Uncharacterized protein
STRING	Migut.F01247.1.p	1e-165	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-106	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]