PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011084760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ERF | ||||||||
Protein Properties | Length: 199aa MW: 22182.7 Da PI: 8.4387 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.7e-19 | 58 | 107 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r +r++lg+f t eAa+a++ a+++l+g XP_011084760.1 58 TYRGVRQRT-WGKWVAEIREP---N-RgARVWLGTFNTSLEAAQAYDDAARRLYG 107 69****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.48E-27 | 57 | 113 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 58 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-13 | 58 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-20 | 58 | 115 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.522 | 58 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-32 | 58 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 59 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MERSNRISVG VLPIAKEPIL APDGPSKPPP ASGKKPAVGR SRKGCMRGKG GPENALCTYR 60 GVRQRTWGKW VAEIREPNRG ARVWLGTFNT SLEAAQAYDD AARRLYGSSA KLNLSSGDGG 120 DDFSQVPSDN YPSGGGEFVV PDNYYREEKS VFDEANCMWE TPTLLDEKRS PNWPENFSQY 180 DFMNRTKQLA DDFQVRWAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-16 | 59 | 114 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-16 | 59 | 114 | 6 | 62 | ATERF1 |
3gcc_A | 4e-16 | 59 | 114 | 6 | 62 | ATERF1 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011084760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084760.1 | 1e-146 | ethylene-responsive transcription factor RAP2-2-like | ||||
TrEMBL | A0A4D8ZPP8 | 4e-66 | A0A4D8ZPP8_SALSN; Uncharacterized protein | ||||
STRING | Migut.F01818.1.p | 5e-52 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3155 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 2e-43 | ERF family protein |