PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011084677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 660aa MW: 73166.5 Da PI: 6.4687 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.7 | 7.9e-15 | 245 | 304 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_011084677.1 245 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 304 57*******************666664478446*************************98 PP | |||||||
2 | AP2 | 46.8 | 7.4e-15 | 347 | 398 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_011084677.1 347 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 398 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.07E-17 | 245 | 314 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.42E-22 | 245 | 314 | No hit | No description |
Pfam | PF00847 | 1.2E-11 | 245 | 304 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.164 | 246 | 312 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-15 | 246 | 313 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-29 | 246 | 318 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-6 | 247 | 258 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.80E-25 | 347 | 408 | No hit | No description |
Pfam | PF00847 | 9.2E-10 | 347 | 398 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-17 | 347 | 408 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.177 | 348 | 406 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-18 | 348 | 406 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-33 | 348 | 412 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-6 | 388 | 408 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 660 aa Download sequence Send to blast |
MAANSMNNWL GFSLSHHQEH SQNSSVCDQL GEFNSDEISA TQVSGECFDL SSHSSIPSLN 60 LPPAPFAILE ALNRNPTHSQ AGWNMKDMSM NSFSCSQNQE ETPKLENFLG VGGRNFTDHN 120 QEQNELQAGC NPIRDTGYNI YQESDTNNMS STGGIINGMN SSTMGLSMIK NWLRNNRAPP 180 QSTDNKVRGE AEPPQAAVPQ TLSLSMSTGS SSDSKLQAAA DSQSSGGAIE SVPRKSIDTF 240 GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQTRKGRQV YLGGYDKEEK AARAYDLAAL 300 KYWGTTTTTN FPISNYEKEM EEMKNMTRQE YVASLRRKSS GFSRGASIYR GVTRHHQHGR 360 WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFEISRY DVKSIMESAT 420 LPIGGAAKRL KDAESAEMAL EMHRANEGNL NLHLAEEQIN SYSNLAFQQA QSLNTYPYAH 480 QRLWCKQEQD PDVGNDGFNY VHRQFQLGST QNFLPLHSLM SLDASSMEQN SGSNSLVYGN 540 NGTNGSSSFM VPMMDVQDGN QNHENGIVGN YHREEKPVLG YESMFGSADA YQQARNLYYQ 600 QLSQQSSSIN TGIGKIGLYN DQGSTCNNSW IPTAVPTLEA RGNKMAVCHG ASTFTVWNNT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00610 | ChIP-seq | Transfer from AT5G17430 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011084677.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084677.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 isoform X1 | ||||
Swissprot | Q8LSN2 | 1e-149 | BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A2G9I0A4 | 0.0 | A0A2G9I0A4_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_032986m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7099 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-133 | AP2 family protein |