PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011084620.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HSF

Protein Properties

Length: 474aa MW: 52313.4 Da PI: 5.4567

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011084620.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.1	2.1e-36	22	114	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d++++ ++sws+++nsfvv++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ XP_011084620.1 22 FLSKTYDMVDDPATDAVVSWSRSNNSFVVWNVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKS 107 9******************999*************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+k + XP_011084620.1 108 INRRKAS 114 **986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.9E-39	14	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.5E-35	17	111	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	7.1E-63	18	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.9E-20	22	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	8.1E-32	22	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.9E-20	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	61	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.9E-20	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MEAATGGGAV GTASSATSPP PFLSKTYDMV DDPATDAVVS WSRSNNSFVV WNVPEFARDL 60 LPKYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG QKHLLKSINR RKASQAQGQQ 120 QPAQIHSSSV GSCIEVGKFG IEEEVERLKR DKNVLMQELV RLRQQQQSTD HQLQTVGQRV 180 HVMEQRQQQM MSFLAKAVQS PDFVAQLVHQ QNEGNRHISG SNKKRRLPNQ DEENLADKFG 240 IASSNGQIVK YQPLMNEAAK AMVSQILKMN TSGRLESKMS SPNSFLIDSL HPPSNVLDSG 300 SSSNRVSGVT LSEVFPTSTG LNEIQSSCNL AHGNDHDTLM DFVQGQGSFP EKKLDLPDEP 360 LKVTMSTDMG YVNPISGFVG DPVSVATDES SVDDGVDVLF DDVHKLPGIE DVFWEQFLSG 420 SPLTGDTDEI DSGTLGLCTG KDKQLEQGSE WDKMKHMNNL TQQMGLLAPT SKSA

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MEAATGGGAV GTASSATSPP PFLSKTYDMV DDPATDAVVS WSRSNNSFVV WNVPEFARDL  60
LPKYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG QKHLLKSINR RKASQAQGQQ  120
QPAQIHSSSV GSCIEVGKFG IEEEVERLKR DKNVLMQELV RLRQQQQSTD HQLQTVGQRV  180
HVMEQRQQQM MSFLAKAVQS PDFVAQLVHQ QNEGNRHISG SNKKRRLPNQ DEENLADKFG  240
IASSNGQIVK YQPLMNEAAK AMVSQILKMN TSGRLESKMS SPNSFLIDSL HPPSNVLDSG  300
SSSNRVSGVT LSEVFPTSTG LNEIQSSCNL AHGNDHDTLM DFVQGQGSFP EKKLDLPDEP  360
LKVTMSTDMG YVNPISGFVG DPVSVATDES SVDDGVDVLF DDVHKLPGIE DVFWEQFLSG  420
SPLTGDTDEI DSGTLGLCTG KDKQLEQGSE WDKMKHMNNL TQQMGLLAPT SKSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-28	1	111	12	129	Heat shock factor protein 1
5d5v_B	3e-28	1	111	12	129	Heat shock factor protein 1
5d5v_D	3e-28	1	111	12	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011084620.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084620.1	0.0	heat stress transcription factor A-1-like
Swissprot	Q84T61	1e-165	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2G9I194	0.0	A0A2G9I194_9LAMI; Heat shock transcription factor
STRING	Migut.F00088.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5054	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-141	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]