PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084481.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 372aa    MW: 41407.9 Da    PI: 4.4265
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084481.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16.1e-20122171255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdps    r  r +lg+++taeeAa  +++a+ kl+g
  XP_011084481.1 122 KFRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 171
                     89*******.**********84....34*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.6E-30121179IPR001471AP2/ERF domain
CDDcd000182.50E-33122178No hitNo description
SMARTSM003801.5E-39122185IPR001471AP2/ERF domain
PfamPF008475.8E-13122171IPR001471AP2/ERF domain
PROSITE profilePS5103223.854122179IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22122179IPR016177DNA-binding domain
PRINTSPR003674.2E-10123134IPR001471AP2/ERF domain
PRINTSPR003674.2E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEMLCPVKYT EHKKITKKLI KPSKHSLKKQ SKNNQNFIAP RTVRISVTDP DATDSSSDDD  60
DELFPRQRVK KYISEIRMET TTDSINGANG RTRTVETLQA KPKPMKVKEA PAPAASQGGS  120
RKFRGVRQRP WGKWAAEIRD PSRRVRLWLG TYDTAEEAAM VYDNAAIKLR GPDALTNFTV  180
PPTKDSSAET NPASVSGYDS GDESHNLSSP TSVLRFRSSL RPGEDAEPSG SGPVQELGNE  240
GEPCTGLEDA PNRPACDASP ADLPVHEVEE CQGETSMVPD YSNDFLPMDI PFLDDFFNVQ  300
SQDQMLFEDI PTSSNYDDFS MSLDEFPILK NSFQEAEFGD FKDTFQDLGF LEVDNYFQDI  360
NDVASVDPLL VL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20121178159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20121189470ATERF1
3gcc_A3e-20121189470ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084481.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084481.10.0ethylene-responsive transcription factor CRF4-like
TrEMBLA0A022QD471e-134A0A022QD47_ERYGU; Uncharacterized protein
STRINGMigut.F00247.1.p1e-135(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-52cytokinin response factor 4